Alternatives and similar repositories for wf-16s

Users that are interested in wf-16s are comparing it to the libraries listed below

• epi2me-labs / wf-amplicon
  ☆41Updated last month
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆48Updated 3 weeks ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆82Updated 2 weeks ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆102Updated last year
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆81Updated last week
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆107Updated 2 weeks ago
• CDCgov / mycosnp-nf
  MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
  ☆85Updated this week
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆70Updated 9 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆60Updated 4 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆99Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆99Updated last week
• bvalot / pyMLST
  whole genome MLST analysis
  ☆50Updated 7 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• mcfrith / last-genome-alignments
  ☆71Updated 2 years ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 2 months ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 8 months ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 9 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆46Updated 2 years ago
• CDCgov / phoenix
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
  ☆90Updated last week
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆117Updated last month
• fmalmeida / bacannot
  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
  ☆105Updated last week
• epi2me-labs / wf-alignment
  ☆32Updated 2 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆88Updated 2 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆158Updated 6 months ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆52Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆131Updated 3 years ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆83Updated last year