Alternatives and similar repositories for wf-16s

Users that are interested in wf-16s are comparing it to the libraries listed below

• epi2me-labs / wf-amplicon
  ☆39Updated 2 weeks ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆44Updated last month
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆71Updated last week
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆68Updated 5 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆87Updated 5 months ago
• mcfrith / last-genome-alignments
  ☆64Updated 2 years ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated 3 weeks ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated this week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated last year
• epi2me-labs / wf-alignment
  ☆31Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆82Updated 2 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated 2 years ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 5 months ago
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆38Updated 2 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆105Updated last month
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆93Updated last year
• CDCgov / mycosnp-nf
  MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
  ☆77Updated last month
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆30Updated last year
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆78Updated last week
• bvalot / pyMLST
  whole genome MLST analysis
  ☆48Updated 4 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 4 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated this week
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆51Updated last year
• rhysf / Synima
  Synteny Imager
  ☆64Updated 2 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆87Updated last week
• PacificBiosciences / pbAA
  ☆27Updated 7 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆145Updated 3 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆95Updated last month
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆69Updated this week