epi2me-labs / wf-16sLinks
☆39Updated last month
Alternatives and similar repositories for wf-16s
Users that are interested in wf-16s are comparing it to the libraries listed below
Sorting:
- Small variant calling for haploid samples☆45Updated 2 months ago
- ☆40Updated last month
- De novo clustering of long transcript reads into genes☆68Updated 6 months ago
- ☆73Updated last month
- Graph-based assembly phasing☆87Updated 6 months ago
- ☆27Updated 8 months ago
- A Nextflow pipeline for evaluating assembly quality☆38Updated 3 weeks ago
- ☆66Updated 2 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆78Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- Microbiome classification pipeline☆65Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆96Updated last year
- whole genome MLST analysis☆49Updated 4 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆95Updated this week
- Simple bacterial assembly and annotation pipeline☆78Updated 3 weeks ago
- ☆31Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆98Updated 3 weeks ago
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆13Updated 3 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆85Updated last week
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Synteny Imager☆65Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated 2 weeks ago