Plant-Food-Research-Open / genepalLinks
A Nextflow pipeline for genome and pan-genome annotation
☆15Updated this week
Alternatives and similar repositories for genepal
Users that are interested in genepal are comparing it to the libraries listed below
Sorting:
- Remove human reads from a sequencing run☆40Updated 3 months ago
- Genome size estimation from long read overlaps☆62Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated 2 weeks ago
- Sketch phylogenetic trees and networks☆23Updated 2 months ago
- Implementation of ToL genome assembly workflows☆23Updated this week
- Basecalling configuration prediction through FASTQ files☆31Updated 5 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 11 months ago
- ☆45Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- Read contamination removal☆25Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated last year
- Fast and exact gap-affine partial order alignment☆56Updated 2 weeks ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Variant call verification☆16Updated 5 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Differential k-mer analysis☆37Updated last year
- software to identify primers that can distinguish genomes☆20Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Updated 4 months ago