Plant-Food-Research-Open / genepalLinks
A Nextflow pipeline for genome and pan-genome annotation
☆12Updated 3 weeks ago
Alternatives and similar repositories for genepal
Users that are interested in genepal are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated last month
- Implementation of ToL genome assembly workflows☆20Updated this week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- ☆24Updated 6 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆24Updated 6 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- The MafFilter genome alignment processor☆18Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆42Updated 3 months ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Reference bias measuring toolkit☆18Updated last month
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- ☆23Updated 9 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- ☆19Updated last week
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆32Updated last month
- Differential k-mer analysis☆36Updated last year
- ☆32Updated 2 years ago
- ☆26Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago