A Nextflow pipeline for genome and pan-genome annotation
☆16Feb 22, 2026Updated last month
Alternatives and similar repositories for genepal
Users that are interested in genepal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for evaluating assembly quality☆39Nov 9, 2025Updated 4 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Feb 7, 2026Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 9 months ago
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- ☆10Dec 16, 2024Updated last year
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆22Nov 20, 2025Updated 4 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆38Feb 17, 2026Updated last month
- Bioinformatics plugin for nushell.☆31Jul 20, 2025Updated 8 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆19Updated this week
- ☆31Nov 2, 2023Updated 2 years ago
- Surveillance of pathogens using population genomics and sequencing☆59Feb 13, 2026Updated last month
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 3 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated this week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- ☆11Mar 4, 2023Updated 3 years ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago
- VCF Zarr Specification☆15Mar 18, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Transfer coordinates across genomes☆23Mar 19, 2026Updated last week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆91Mar 10, 2026Updated 2 weeks ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- Partial reimplementation of bcftools for VCF Zarr☆23Mar 18, 2026Updated last week
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated last month
- Deep learning the cis-regulatory code for gene expression in selected model plants☆23Mar 15, 2024Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆23Mar 2, 2026Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆28Updated this week
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 4 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated last month
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆21Mar 13, 2026Updated 2 weeks ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- Simple bacterial assembly and annotation pipeline☆85Updated this week
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Updated this week
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago