Small variant calling for haploid samples
☆57Mar 3, 2026Updated 3 months ago
Alternatives and similar repositories for wf-bacterial-genomes
Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆49Jan 23, 2026Updated 5 months ago
- ☆44Mar 13, 2026Updated 3 months ago
- Resources for phage genomics and annotation☆11Oct 27, 2025Updated 8 months ago
- Metagenomic classification of long-read sequencing data☆107Jan 22, 2026Updated 5 months ago
- ☆41Dec 15, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆52Apr 10, 2026Updated 2 months ago
- ☆34Mar 9, 2026Updated 3 months ago
- ☆32Nov 2, 2023Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆220May 9, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 9 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Comparison of multiple long read datasets☆175Dec 2, 2025Updated 6 months ago
- ☆22Sep 26, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆23Mar 20, 2026Updated 3 months ago
- ☆105Updated this week
- ☆22Jun 1, 2026Updated 3 weeks ago
- De novo clustering of long transcript reads into genes☆78Apr 27, 2025Updated last year
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated last year
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆200Jun 10, 2026Updated 2 weeks ago
- ☆15Oct 24, 2025Updated 8 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆60May 24, 2026Updated last month
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆90Mar 10, 2026Updated 3 months ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Jun 10, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆399Updated this week
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆162Mar 25, 2026Updated 3 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63May 6, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆232Apr 27, 2026Updated 2 months ago
- ☆22Nov 24, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- A tool for removing redundant genomes from a set of assemblies☆83May 6, 2026Updated last month
- ☆18Apr 6, 2022Updated 4 years ago
- ☆171Jan 22, 2026Updated 5 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 6 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆655May 15, 2026Updated last month
- Analysis components from Oxford Nanopore Research☆97Apr 9, 2026Updated 2 months ago