Alternatives and similar repositories for wf-bacterial-genomes

Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below

• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆87Updated 2 years ago
• epi2me-labs / wf-16s
  ☆41Updated last month
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆97Updated last month
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 8 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆154Updated 2 months ago
• epi2me-labs / wf-amplicon
  ☆42Updated 3 weeks ago
• CDCgov / mycosnp-nf
  MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
  ☆82Updated 3 weeks ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆79Updated 3 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆60Updated last year
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆80Updated last month
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆77Updated 2 years ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆99Updated 2 weeks ago
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆52Updated last year
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆86Updated last week
• HubertTang / PLASMe
  ☆32Updated last year
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆62Updated 5 months ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆37Updated 6 years ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆147Updated 3 weeks ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆60Updated 3 months ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 7 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆127Updated 4 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆71Updated last month
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆76Updated 8 months ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆81Updated 2 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆31Updated last year
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated last month
• EBI-Metagenomics / mettannotator
  ☆81Updated last month