Small variant calling for haploid samples
☆62Mar 3, 2026Updated 7 months ago
Alternatives and similar repositories for wf-bacterial-genomes
Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Dec 15, 2025Updated 10 months ago
- Metagenomic classification of long-read sequencing data☆112Jan 22, 2026Updated 9 months ago
- ☆45Mar 13, 2026Updated 7 months ago
- ☆51Jan 23, 2026Updated 9 months ago
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆52Apr 10, 2026Updated 6 months ago
- De novo construction of isoforms from long-read data☆48Sep 9, 2026Updated last month
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆246Oct 8, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- ☆120Oct 16, 2026Updated 2 weeks ago
- De novo clustering of long transcript reads into genes☆83Oct 2, 2026Updated 3 weeks ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated 2 years ago
- Comparison of multiple long read datasets☆182Aug 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Create statistic summary of an Oxford Nanopore read dataset☆140Nov 4, 2022Updated 3 years ago
- ☆34Mar 9, 2026Updated 7 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- ☆22Jun 1, 2026Updated 4 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- ☆36Nov 2, 2023Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago
- ☆83Jun 2, 2023Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆69Dec 8, 2025Updated 10 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆46Oct 8, 2026Updated 3 weeks ago
- quality filtering tool for long reads☆423Sep 17, 2025Updated last year
- ☆158Jul 24, 2026Updated 3 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆24Mar 20, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 3 months ago
- ☆22Nov 24, 2025Updated 11 months ago
- Rapid Profiling and Deconvolution Tool for Metagenomes☆114Sep 14, 2026Updated last month
- Surveillance of pathogens using population genomics and sequencing☆62Oct 7, 2026Updated 3 weeks ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated last week
- Clermont PCR method In-Silico☆28Feb 8, 2024Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆77Apr 9, 2026Updated 6 months ago