epi2me-labs / wf-bacterial-genomesLinks
Small variant calling for haploid samples
☆47Updated 2 weeks ago
Alternatives and similar repositories for wf-bacterial-genomes
Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below
Sorting:
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- ☆40Updated 2 weeks ago
- ☆73Updated this week
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 7 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆96Updated this week
- Metagenomic classification of long-read sequencing data☆96Updated 2 weeks ago
- ARG normalization by mapping to the ARO ontology.☆60Updated 4 months ago
- Bioinformatics tool for Locus Visualisation☆147Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆85Updated this week
- ☆41Updated 2 weeks ago
- Simple bacterial assembly and annotation pipeline☆80Updated 2 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆126Updated 3 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 years ago
- An R package designed for drawing gene arrow maps☆92Updated 2 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- ☆80Updated last week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆81Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A program for detection of tRNA genes☆75Updated 3 years ago
- Similarity networks of biosynthetic gene clusters☆145Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆94Updated 6 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 2 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆79Updated last week
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- ☆31Updated 11 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week