epi2me-labs / wf-bacterial-genomesLinks
Small variant calling for haploid samples
☆41Updated last week
Alternatives and similar repositories for wf-bacterial-genomes
Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below
Sorting:
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- ☆34Updated 4 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- ☆62Updated last week
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- Metagenomic classification of long-read sequencing data☆93Updated last week
- ☆39Updated 4 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last month
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆76Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆79Updated last week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆112Updated last week
- De novo clustering of long transcript reads into genes☆68Updated 4 months ago
- Bifrost graph gene caller.☆96Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆79Updated 3 weeks ago
- ARG normalization by mapping to the ARO ontology.☆58Updated 3 weeks ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆50Updated last year
- A program for detection of tRNA genes☆67Updated 2 years ago
- An R package designed for drawing gene arrow maps☆87Updated last month
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Supporting code for uncultivated gut virus manuscript☆73Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆113Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated 7 months ago
- Microbiome classification pipeline☆66Updated 3 months ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago