Alternatives and similar repositories for wf-bacterial-genomes

Users that are interested in wf-bacterial-genomes are comparing it to the libraries listed below

• epi2me-labs / wf-16s
  ☆30Updated last month
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated last year
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆44Updated last month
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆51Updated 3 weeks ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆77Updated 3 weeks ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆57Updated this week
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆85Updated 3 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• EBI-Metagenomics / mettannotator
  ☆70Updated 2 weeks ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆74Updated this week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated this week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• epi2me-labs / wf-amplicon
  ☆33Updated last month
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆66Updated this week
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆49Updated last year
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆60Updated 2 years ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆87Updated last week
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆78Updated 8 months ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆83Updated 2 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• voorloopnul / awesome-phages
  A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
  ☆49Updated 2 years ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆57Updated 3 weeks ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆102Updated 3 weeks ago
• bvalot / pyMLST
  whole genome MLST analysis
  ☆42Updated last month
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆45Updated 5 years ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆73Updated last year
• dbeisser / Natrix2
  Open-source bioinformatics pipeline for the preprocessing of raw amplicon sequencing / metabarcoding data.
  ☆12Updated this week
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆85Updated last year