☆23Aug 13, 2026Updated 2 months ago
Alternatives and similar repositories for MARLIN
Users that are interested in MARLIN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sturgeon is a CNS neural network classifier☆51Sep 4, 2026Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- A simplified version of Dorado built on top of S/BLOW5 format.☆42Updated this week
- ☆27Nov 14, 2025Updated 11 months ago
- A nextflow pipeline for calling modifications in nanopore reads.☆17Sep 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GPU CRF-CTC decoding for nanopore basecalling☆16Oct 7, 2026Updated last week
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- De novo construction of isoforms from long-read data☆47Sep 9, 2026Updated last month
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆28Oct 2, 2025Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆90Updated this week
- GUI for inspecting POD5 files☆35Dec 19, 2024Updated last year
- consensus approach for community profiling with nanopore amplicon sequencing data☆18Sep 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Apr 16, 2026Updated 5 months ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆46Aug 26, 2026Updated last month
- GitHub Action to Sync subtrees with a source project☆11Oct 16, 2019Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Isoform-level spatial transcriptomics analysis☆18May 3, 2026Updated 5 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated 2 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated 2 months ago
- A bioinformatics tool for working with modified bases☆278Jul 14, 2026Updated 3 months ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 3 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆13Aug 30, 2024Updated 2 years ago
- ☆24Oct 31, 2025Updated 11 months ago
- ☆21May 8, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Super-fast and accurate demultiplexing of direct RNA-seq runs (Pryszcz*, Diensthuber*, et al., Genome Res 2025)☆20Aug 21, 2026Updated last month
- Detect somatic variants from tumor and normal WGS/WXS data☆21Sep 21, 2026Updated 3 weeks ago
- Argo: species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping☆17Aug 24, 2026Updated last month
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Jul 22, 2026Updated 2 months ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Jul 14, 2026Updated 3 months ago