Alternatives and similar repositories for MARLIN

Users that are interested in MARLIN are comparing it to the libraries listed below

• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆39Updated this week
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆40Updated last year
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆48Updated last week
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆87Updated 3 weeks ago
• gear-genomics / dicey
  In-silico PCR, primer design and padlock design for in-situ sequencing
  ☆51Updated 3 months ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆46Updated last month
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆34Updated 4 months ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated last month
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆30Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 4 months ago
• srbehera / DRAGEN_Analysis
  ☆36Updated last year
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• WGLab / LongReadSum
  ☆24Updated last month
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated 2 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated last week
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆69Updated last month
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 3 weeks ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆43Updated 2 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• schatzlab / appliedgenomics2021
  Materials for Spring 2021 Applied Genomics Course
  ☆53Updated 4 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆35Updated 6 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• PacificBiosciences / pbfusion
  ☆23Updated 5 months ago
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆78Updated last month
• epi2me-labs / wf-basecalling
  ☆46Updated 3 weeks ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year