☆16Nov 16, 2023Updated 2 years ago
Alternatives and similar repositories for resfinder
Users that are interested in resfinder are comparing it to the libraries listed below
Sorting:
- ☆27Nov 2, 2023Updated 2 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆19Oct 19, 2023Updated 2 years ago
- ☆19Dec 4, 2025Updated 3 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 3 months ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆31Dec 16, 2025Updated 2 months ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60May 23, 2019Updated 6 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆30Jan 24, 2022Updated 4 years ago
- we collected Gram-stained bacteria images from lower respiratory tract specimens of patients with lung infections in Chinese PLA General…☆12Jan 18, 2024Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- VNTR annotation using motif selection☆39Feb 23, 2026Updated last week
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆13May 27, 2025Updated 9 months ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Feb 23, 2026Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Feb 26, 2026Updated last week
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- pathway based data integration and visualization☆47Mar 28, 2025Updated 11 months ago
- Reduced Alphabet based Protein similarity Search☆40Nov 30, 2020Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- ☆14Mar 26, 2024Updated last year
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Aug 27, 2019Updated 6 years ago
- ☆13Aug 13, 2024Updated last year
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- Coarse-grained simulations of biomolecular complexes☆13Aug 2, 2023Updated 2 years ago
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 8 years ago
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated 3 weeks ago
- Software for the Tree-Based Scan Statistic☆14Updated this week
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Nov 20, 2019Updated 6 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- FinalVersions☆17Apr 3, 2017Updated 8 years ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Python library for talking to Apollo API☆10Jan 31, 2024Updated 2 years ago
- Helper Functions for Academic Writing and Organization☆11Dec 26, 2024Updated last year