mobinasri / flaggerLinks
Evaluating genome assemblies
☆114Updated 2 weeks ago
Alternatives and similar repositories for flagger
Users that are interested in flagger are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- Structural Variant Identification Method using Genome Assemblies☆133Updated 3 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆118Updated 2 weeks ago
- High-precision TE Annotator☆149Updated last month
- Yet another k-mer analyzer☆157Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆110Updated last year
- A program for assessing the T2T genome continuity☆92Updated last month
- Phased assembly variant caller☆132Updated last year
- Application of pan-genome for population☆116Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- SRF: Satellite Repeat Finder☆101Updated 2 years ago
- Collection of tools for the analysis of CpG data☆104Updated 6 months ago
- A organelle de novo genome assembly toolkit☆73Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆99Updated 3 weeks ago
- ☆121Updated last week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆110Updated 3 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A list of software for pangenomics☆166Updated 2 weeks ago
- tomato graph pangenome☆87Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆93Updated 2 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆145Updated 6 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Updated last month
- ☆146Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Updated 7 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆131Updated last month
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Updated 2 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Pangenome-based genome inference☆153Updated last month