aljpetri / isONform
De novo construction of isoforms from long-read data
☆26Updated 5 months ago
Alternatives and similar repositories for isONform
Users that are interested in isONform are comparing it to the libraries listed below
Sorting:
- PECAT, a phased error correct and assembly tool☆49Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆27Updated last year
- Evaluating genome assemblies☆89Updated 2 months ago
- ☆24Updated last week
- De novo clustering of long transcript reads into genes☆60Updated 2 weeks ago
- genomic variant frequency estimation☆11Updated 4 months ago
- ☆33Updated last month
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated 3 weeks ago
- WDL workflows for variant calling and assembly using ONT☆34Updated last week
- ☆27Updated this week
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 2 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆41Updated 7 months ago
- ☆24Updated 2 months ago
- Structural variant (SV) analysis tools☆36Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last week
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- ☆40Updated 3 months ago
- A program for assessing the T2T genome continuity☆73Updated last month
- A tutorial on structural variant calling for short read sequencing data☆35Updated 6 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆13Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated last month
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- ☆61Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆16Updated 2 weeks ago