De novo construction of isoforms from long-read data
☆38Jul 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for isONform
Users that are interested in isONform are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo clustering of long transcript reads into genes☆25Dec 15, 2025Updated 7 months ago
- De novo clustering of long transcript reads into genes☆81Apr 27, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 7 months ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- Repository☆10Oct 23, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Pipeline for the identification of (coding) gene structures in draft genomes.☆38May 9, 2024Updated 2 years ago
- reference-free transcriptome assembly for short and long reads☆110Mar 13, 2026Updated 4 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆73Apr 9, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- rnalib: a python-based transcriptomics library☆13Updated this week
- Comparison of multiple long read datasets☆177Jul 1, 2026Updated 3 weeks ago
- ☆50Jan 23, 2026Updated 6 months ago
- ☆31Nov 28, 2024Updated last year
- ☆112Updated this week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Mar 13, 2026Updated 4 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆116May 1, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆32Nov 2, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 3 months ago
- Small variant calling for haploid samples☆59Mar 3, 2026Updated 4 months ago
- cDNA read preprocessing☆95Jul 25, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆175Jun 24, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Training materials for all things bioinformatics☆17Jun 29, 2026Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 4 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63Jun 26, 2026Updated last month
- Gene copy number prediction from k-mer frequencies☆18Apr 15, 2026Updated 3 months ago
- haplotypic duplication identification tool☆292Oct 30, 2025Updated 8 months ago