aljpetri / isONform
De novo construction of isoforms from long-read data
☆25Updated 2 months ago
Alternatives and similar repositories for isONform:
Users that are interested in isONform are comparing it to the libraries listed below
- Evaluating genome assemblies☆79Updated last month
- PECAT, a phased error correct and assembly tool☆46Updated 3 weeks ago
- WDL workflows for variant calling and assembly using ONT☆30Updated this week
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆37Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 8 months ago
- ☆58Updated last year
- De novo clustering of long transcript reads into genes☆54Updated 3 years ago
- ☆28Updated last month
- A program for assessing the T2T genome continuity☆64Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- ☆37Updated 4 months ago
- A tutorial on structural variant calling for short read sequencing data☆26Updated 3 months ago
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated 2 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆76Updated 2 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 4 months ago
- ☆28Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆44Updated 6 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆24Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- implicit pangenome graph☆51Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆79Updated last week
- High-precision TE Annotator☆89Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 weeks ago
- Convert HAL to VG☆21Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆32Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated 3 weeks ago