De novo construction of isoforms from long-read data
☆39Sep 4, 2026Updated this week
Alternatives and similar repositories for isONform
Users that are interested in isONform are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo clustering of long transcript reads into genes☆24Dec 15, 2025Updated 8 months ago
- De novo clustering of long transcript reads into genes☆80Updated this week
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 8 months ago
- Evaluating genome assemblies☆126Mar 3, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆263Aug 17, 2026Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆42Jul 28, 2026Updated last month
- reference-free transcriptome assembly for short and long reads☆112Mar 13, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 4 months ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated last month
- Comparison of multiple long read datasets☆180Aug 3, 2026Updated last month
- ☆51Jan 23, 2026Updated 7 months ago
- ☆31Nov 28, 2024Updated last year
- ☆116Updated this week
- Tandem repeat expansion detection or genotyping from long-read alignments☆170Mar 25, 2026Updated 5 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Aug 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆88Updated this week
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last month
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆118Aug 25, 2026Updated last week
- ☆34Nov 2, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆71Apr 25, 2026Updated 4 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- Small variant calling for haploid samples☆59Mar 3, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated 3 weeks ago
- Training materials for all things bioinformatics☆17Jun 29, 2026Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆94Mar 23, 2026Updated 5 months ago