aljpetri / isONformView external linksLinks
De novo construction of isoforms from long-read data
☆35Jun 10, 2025Updated 8 months ago
Alternatives and similar repositories for isONform
Users that are interested in isONform are comparing it to the libraries listed below
Sorting:
- ☆26Nov 2, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 9 months ago
- Evaluating genome assemblies☆114Jan 11, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- De novo clustering of long transcript reads into genes☆19Dec 15, 2025Updated 2 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆37Jan 14, 2025Updated last year
- ☆82Jan 16, 2026Updated 3 weeks ago
- Comparison of multiple long read datasets☆155Dec 2, 2025Updated 2 months ago
- ☆61Jun 14, 2021Updated 4 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 7 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆105Feb 8, 2026Updated last week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆46Oct 21, 2025Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆49Updated this week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- ☆73Jun 2, 2023Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Dec 14, 2025Updated 2 months ago
- ☆44Feb 2, 2026Updated last week
- Gene copy number prediction from k-mer frequencies☆14Jul 29, 2024Updated last year
- Telomere-to-Telomere diploid Indian Genome☆14Updated this week
- A tool for somatic structural variant calling using long reads☆160Oct 20, 2025Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Jul 23, 2024Updated last year
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- cDNA read preprocessing☆85Jul 25, 2024Updated last year
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago