aljpetri / isONformLinks
De novo construction of isoforms from long-read data
☆35Updated 6 months ago
Alternatives and similar repositories for isONform
Users that are interested in isONform are comparing it to the libraries listed below
Sorting:
- PECAT, a phased error correct and assembly tool☆56Updated last week
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated this week
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated last week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆22Updated last week
- A Nextflow pipeline for evaluating assembly quality☆38Updated last month
- ☆69Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆35Updated 7 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- De novo clustering of long transcript reads into genes☆68Updated 7 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆26Updated 8 months ago
- ☆42Updated last week
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆24Updated 7 months ago
- ☆18Updated last year
- Linear-time de novo Long Read Assembler☆41Updated last month
- A program for assessing the T2T genome continuity☆90Updated 2 months ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago
- ☆29Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆37Updated last week
- Toolkit to convert the output of common variant calling programs to VCF☆23Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆82Updated 3 weeks ago
- ☆38Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆32Updated 3 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆41Updated 3 weeks ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Phased structural variant discovery in pangenomes☆39Updated this week