sheinasim-USDA / HiFiAdapterFiltLinks
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
☆90Updated 11 months ago
Alternatives and similar repositories for HiFiAdapterFilt
Users that are interested in HiFiAdapterFilt are comparing it to the libraries listed below
Sorting:
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 9 months ago
- Structural Variant Identification Method using Genome Assemblies☆120Updated 2 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆74Updated last week
- Evaluating genome assemblies☆97Updated last week
- Application of pan-genome for population☆106Updated 8 months ago
- High-precision TE Annotator☆119Updated 2 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆106Updated 3 weeks ago
- source code for EVM☆112Updated 6 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆129Updated 8 months ago
- Phased assembly variant caller☆120Updated 6 months ago
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆138Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆114Updated last week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆97Updated 4 months ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- tomato graph pangenome☆83Updated 2 years ago
- PacBio BAM toolkit☆43Updated 4 months ago
- Nanopore data assembler☆156Updated 3 years ago
- Pangenome-based genome inference☆129Updated 2 months ago
- Constructing a pangenome gene graph☆190Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- A organelle de novo genome assembly toolkit☆60Updated 4 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- Comparison of multiple long read datasets☆134Updated last month
- Tandem repeat genotyping and visualization from PacBio HiFi data☆118Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- ☆116Updated last month