stjacqrm / centroidLinks
tool to determine optimal refrerence genome given a set of fasta files
☆15Updated 2 years ago
Alternatives and similar repositories for centroid
Users that are interested in centroid are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆13Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆14Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Resolving Species Level Classification Using Emu☆13Updated last year
- Genome size estimation from long read overlaps☆58Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 4 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- ☆14Updated 4 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Neptune: Genomic Signature Discovery☆20Updated 7 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 5 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 9 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 9 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Interpretative standards for AMR genotypes☆21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆46Updated last week