stjacqrm / centroid
tool to determine optimal refrerence genome given a set of fasta files
☆14Updated last year
Alternatives and similar repositories for centroid
Users that are interested in centroid are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Visualize microbial evolution at the SNP level!☆14Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 9 months ago
- ☆10Updated last month
- Genome size estimation from long read overlaps☆55Updated last month
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 8 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆10Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆11Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 11 months ago
- Resolving Species Level Classification Using Emu☆12Updated 11 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 7 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 11 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 7 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆11Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- Targeted Detection and Reconstruction of Plasmids☆20Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year