tool to determine optimal refrerence genome given a set of fasta files
☆15May 18, 2023Updated 3 years ago
Alternatives and similar repositories for centroid
Users that are interested in centroid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 weeks ago
- ☆10Apr 16, 2025Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 2 weeks ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- µbinfie blog☆19Jul 21, 2025Updated last year
- UPHL's Reference Free Pipeline☆29Updated this week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Updated this week
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆27Apr 20, 2023Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated last month
- Bacterial GWAS analysis☆58Jun 12, 2026Updated last month
- whole genome MLST analysis☆55Jun 17, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python package to update the MLST database for the mlst tool.☆29Jul 22, 2026Updated 2 weeks ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆116Updated this week
- SeqSero2☆41Oct 1, 2025Updated 10 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago