stjacqrm / centroid
tool to determine optimal refrerence genome given a set of fasta files
☆14Updated last year
Alternatives and similar repositories for centroid:
Users that are interested in centroid are comparing it to the libraries listed below
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- software to identify primers that can distinguish genomes☆21Updated last month
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Generate basic stats for an assembly.☆10Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 8 months ago
- Genome size estimation from long read overlaps☆49Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆14Updated 3 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- ☆10Updated this week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- ☆13Updated 7 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated 11 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 6 months ago
- Plasmid analysis using rearrangement distances☆31Updated 3 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Intra-species bacterial contamination detection☆25Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Organism-specific interpretation of AMR genotypes☆10Updated 11 months ago
- ☆11Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆19Updated 5 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Calculate assocations between genes and traits☆23Updated 4 months ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 7 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 5 months ago