stjacqrm / centroidLinks
tool to determine optimal refrerence genome given a set of fasta files
☆15Updated 2 years ago
Alternatives and similar repositories for centroid
Users that are interested in centroid are comparing it to the libraries listed below
Sorting:
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Updated this week
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Updated 9 months ago
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Generate basic stats for an assembly.☆13Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Updated last year
- Neptune: Genomic Signature Discovery☆20Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- ☆10Updated 5 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- Interpretative standards for AMR genotypes☆25Updated 2 weeks ago
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago
- Genome size estimation from long read overlaps☆73Updated last week
- ☆10Updated 7 months ago