CDCgov / mycosnp-nfLinks
MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
☆80Updated this week
Alternatives and similar repositories for mycosnp-nf
Users that are interested in mycosnp-nf are comparing it to the libraries listed below
Sorting:
- Small variant calling for haploid samples☆47Updated 3 weeks ago
- Metagenomic classification of long-read sequencing data☆97Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- ☆75Updated last week
- ☆40Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆202Updated 3 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 2 weeks ago
- Create a tree using Mash distances☆177Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆128Updated 10 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆118Updated last year
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆184Updated 3 weeks ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last week
- ARG normalization by mapping to the ARO ontology.☆62Updated 4 months ago
- ARTIC SARS-CoV-2 workflow and reporting