MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
☆92Mar 10, 2026Updated 2 months ago
Alternatives and similar repositories for mycosnp-nf
Users that are interested in mycosnp-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPHL's Reference Free Pipeline☆28May 21, 2026Updated last week
- Assembly of Nanopore Sequencing☆17May 20, 2026Updated last week
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆104May 20, 2026Updated last week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- Bacterial surveillance pipeline.☆27Apr 28, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated 2 months ago
- emm Automatic Isolate Labeller☆13Mar 25, 2025Updated last year
- ☆27Aug 2, 2023Updated 2 years ago
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 7 months ago
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 2 months ago
- ☆11Jun 29, 2023Updated 2 years ago
- Reference-based consensus creation☆61May 22, 2026Updated last week
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 2 months ago
- ☆10Apr 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27May 22, 2025Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆62May 21, 2026Updated last week
- Software for the Tree-Based Scan Statistic☆16Apr 28, 2026Updated last month
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Dockerfiles and documentation on tools for public health bioinformatics☆223May 21, 2026Updated last week
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆232Apr 27, 2026Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆74May 14, 2026Updated 2 weeks ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 10 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 3 months ago
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated 11 months ago
- Metagenomic classification of long-read sequencing data☆106Jan 22, 2026Updated 4 months ago
- ☆102May 11, 2026Updated 2 weeks ago
- ☆24Feb 2, 2026Updated 3 months ago
- Interpretative standards for AMR genotypes☆29May 11, 2026Updated 2 weeks ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated 3 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Scan contig files against PubMLST typing schemes☆282Mar 26, 2026Updated 2 months ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 7 months ago
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago