CDCgov / mycosnp-nf
CDCgov/mycosnp-nf
☆44Updated last month
Alternatives and similar repositories for mycosnp-nf:
Users that are interested in mycosnp-nf are comparing it to the libraries listed below
- A pipeline for running AMRfinderPlus and collating results into functional classes☆73Updated 5 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆112Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆93Updated last week
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆72Updated last week
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆81Updated last year
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆46Updated 10 months ago
- Collection of scripts for bacterial genomics☆44Updated 5 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆121Updated last week
- Reorients assembled microbial sequences☆107Updated 2 weeks ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆39Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 3 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆132Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆72Updated 4 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- ☆79Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated last year
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 5 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 2 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆92Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆117Updated 2 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year