CDCgov / mycosnp-nfLinks
MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
☆78Updated last month
Alternatives and similar repositories for mycosnp-nf
Users that are interested in mycosnp-nf are comparing it to the libraries listed below
Sorting:
- ☆73Updated last month
- Metagenomic classification of long-read sequencing data☆95Updated this week
- Small variant calling for haploid samples☆45Updated 2 months ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- ☆39Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 3 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆112Updated 7 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Create a tree using Mash distances☆173Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 2 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆179Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated 9 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated 3 weeks ago
- A toolbox for comparative genomics.☆105Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆115Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 2 weeks ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆87Updated this week
- a short-read polishing tool for long-read assemblies☆194Updated last month
- SEER, reimplemented in python 🐍🔮☆125Updated 5 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- Interactive quality assessment of genome assemblies☆114Updated 6 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆73Updated 6 months ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 5 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆51Updated last year
- Graph-based assembly phasing☆87Updated 6 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆96Updated 3 weeks ago