Pipeline for the identification of (coding) gene structures in draft genomes.
☆36May 9, 2024Updated last year
Alternatives and similar repositories for genomeannotator
Users that are interested in genomeannotator are comparing it to the libraries listed below
Sorting:
- ☆27Nov 2, 2023Updated 2 years ago
- ☆44Jan 23, 2026Updated last month
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆27Apr 11, 2025Updated 10 months ago
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- ☆73Jun 2, 2023Updated 2 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Oct 27, 2023Updated 2 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆234Sep 18, 2025Updated 5 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆103Jul 23, 2024Updated last year
- ☆14Oct 24, 2025Updated 4 months ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Aug 28, 2018Updated 7 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆63Sep 19, 2025Updated 5 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆186Updated this week
- ☆83Jan 16, 2026Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆168Aug 8, 2024Updated last year
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆27May 13, 2025Updated 9 months ago
- ☆22Jul 30, 2025Updated 7 months ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 3 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆203Feb 16, 2026Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆143Nov 24, 2025Updated 3 months ago
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Implementation of ToL genome assembly workflows☆26Feb 12, 2026Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆160Jul 4, 2025Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- ☆41Dec 15, 2025Updated 2 months ago
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆13Feb 11, 2026Updated 2 weeks ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Jan 20, 2026Updated last month
- PacBio BAM toolkit☆50Feb 26, 2025Updated last year
- tomato graph pangenome☆87Dec 13, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago