nf-core / genomeannotatorLinks
Pipeline for the identification of (coding) gene structures in draft genomes.
☆30Updated last year
Alternatives and similar repositories for genomeannotator
Users that are interested in genomeannotator are comparing it to the libraries listed below
Sorting:
- ☆39Updated 5 months ago
- ☆36Updated this week
- De novo clustering of long transcript reads into genes☆69Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- De novo construction of isoforms from long-read data☆32Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆35Updated 4 months ago
- FamDB file format library and utilities☆31Updated 3 weeks ago
- PECAT, a phased error correct and assembly tool☆54Updated 2 months ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 5 months ago
- ☆17Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 3 months ago
- ☆64Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆27Updated last month
- Find Unique genomic Regions☆30Updated last week
- A dotplot generator for large chromosomes☆43Updated last year
- ☆26Updated 6 months ago
- Reference genome quality scores☆21Updated 4 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆52Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- ☆29Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆15Updated 3 months ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- WDL workflows for variant calling and assembly using ONT☆36Updated 2 weeks ago
- ☆19Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last week