Pipeline for the identification of (coding) gene structures in draft genomes.
☆44Jul 28, 2026Updated 2 months ago
Alternatives and similar repositories for genomeannotator
Users that are interested in genomeannotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to investigate horizontal gene transfer from NGS data☆27Sep 11, 2026Updated 3 weeks ago
- De novo construction of isoforms from long-read data☆47Sep 9, 2026Updated last month
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆32Apr 11, 2025Updated last year
- ☆51Jan 23, 2026Updated 8 months ago
- k-mer similarity analysis pipeline☆24Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 10 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆76Apr 9, 2026Updated 6 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Sep 1, 2026Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆63Oct 27, 2023Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆41Jan 14, 2025Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- De novo clustering of long transcript reads into genes☆82Oct 2, 2026Updated last week
- ☆15Oct 24, 2025Updated 11 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 6 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆97Nov 23, 2024Updated last year
- ☆83Jun 2, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 5 months ago
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆14Oct 1, 2026Updated last week
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 9 months ago
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last week
- Training materials for all things bioinformatics☆17Jun 29, 2026Updated 3 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆14Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆119Jul 23, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆250Sep 6, 2024Updated 2 years ago
- Small variant calling for haploid samples☆60Mar 3, 2026Updated 7 months ago
- A program for assessing the T2T genome continuity and completeness☆97Sep 8, 2026Updated last month
- (Meta-)genome screening for functional and natural product gene sequences☆119Sep 21, 2026Updated 2 weeks ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- Align proteins to genomes with splicing and frameshift☆421Jan 5, 2026Updated 9 months ago