Alternatives and similar repositories for genomeannotator

Users that are interested in genomeannotator are comparing it to the libraries listed below

• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆31Updated 2 months ago
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆35Updated 3 months ago
• epi2me-labs / wf-16s
  ☆34Updated 4 months ago
• epi2me-labs / wf-amplicon
  ☆39Updated 4 months ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆43Updated 10 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆23Updated 4 months ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated last month
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆31Updated this week
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆68Updated 4 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated 2 months ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated last week
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆63Updated this week
• mcfrith / last-genome-alignments
  ☆64Updated 2 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated this week
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆28Updated last week
• genomicepidemiology / plasmidfinder
  ☆15Updated last year
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆40Updated 2 weeks ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• wdecoster / phasius
  ☆15Updated 2 months ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆52Updated 3 months ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆23Updated 2 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆41Updated last week
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• pierrepeterlongo / back_to_sequences
  ☆44Updated last month
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆52Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated last month
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆15Updated 2 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆25Updated 2 years ago