Pipeline for the identification of (coding) gene structures in draft genomes.
☆42Jul 28, 2026Updated last month
Alternatives and similar repositories for genomeannotator
Users that are interested in genomeannotator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to investigate horizontal gene transfer from NGS data☆27Jul 27, 2026Updated last month
- De novo construction of isoforms from long-read data☆39Updated this week
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆31Apr 11, 2025Updated last year
- ☆51Jan 23, 2026Updated 7 months ago
- k-mer similarity analysis pipeline☆24Jul 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 8 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 4 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆174Nov 24, 2025Updated 9 months ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Aug 12, 2026Updated 2 weeks ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆41Jan 14, 2025Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆62Oct 27, 2023Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- ☆15Oct 24, 2025Updated 10 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Updated this week
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆98Nov 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆82Jun 2, 2023Updated 3 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.☆14Updated this week
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 7 months ago
- Nascent Transcription Processing Pipeline☆25Jul 27, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆115Aug 20, 2026Updated last week
- Training materials for all things bioinformatics☆17Jun 29, 2026Updated 2 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆118Jul 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆245Sep 6, 2024Updated last year
- Small variant calling for haploid samples☆59Mar 3, 2026Updated 5 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 6 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆94Jul 23, 2026Updated last month
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆206Jun 10, 2026Updated 2 months ago