xiaoming-liu / stairway-plot-v2Links
The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.
☆58Updated 3 months ago
Alternatives and similar repositories for stairway-plot-v2
Users that are interested in stairway-plot-v2 are comparing it to the libraries listed below
Sorting:
- Portable solution to generate genome alignment chains using lastz☆60Updated 2 weeks ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- A organelle de novo genome assembly toolkit☆71Updated 10 months ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- Application of pan-genome for population☆116Updated 2 months ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆42Updated 5 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆51Updated 4 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆41Updated 2 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Updated 10 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated this week
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago