Alternatives and similar repositories for stairway-plot-v2

Users that are interested in stairway-plot-v2 are comparing it to the libraries listed below

• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆49Updated 4 months ago
• mcfrith / last-genome-alignments
  ☆63Updated 2 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated 3 weeks ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆83Updated 2 years ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆107Updated 9 months ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆60Updated 4 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆45Updated 3 years ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 4 months ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated 2 weeks ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆51Updated 2 weeks ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• mobinasri / flagger
  Evaluating genome assemblies
  ☆98Updated 2 weeks ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆121Updated 2 weeks ago
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆81Updated 6 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆75Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆79Updated 2 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated 11 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆35Updated this week
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated last year
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆80Updated last week
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated last year
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆81Updated 2 weeks ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆45Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆102Updated 9 months ago