xiaoming-liu / stairway-plot-v2Links
The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.
☆50Updated last week
Alternatives and similar repositories for stairway-plot-v2
Users that are interested in stairway-plot-v2 are comparing it to the libraries listed below
Sorting:
- Portable solution to generate genome alignment chains using lastz☆59Updated this week
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆50Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- A organelle de novo genome assembly toolkit☆69Updated 7 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆39Updated 2 months ago
- Tools and Utilities for msmc and msmc2☆48Updated last month
- Application of pan-genome for population☆109Updated 11 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 11 months ago
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 8 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A Nextflow pipeline for evaluating assembly quality☆37Updated this week
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated this week
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated 3 weeks ago
- PacBio BAM toolkit☆46Updated 7 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆50Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆29Updated last year
- A program for assessing the T2T genome continuity☆86Updated last week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago