xiaoming-liu / stairway-plot-v2
The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.
☆31Updated last year
Related projects ⓘ
Alternatives and complementary repositories for stairway-plot-v2
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆22Updated 8 months ago
- ☆25Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- MSMC2 Scripts☆23Updated 8 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated 2 weeks ago
- Tutorial about R package PopGenome☆40Updated 5 years ago
- ☆38Updated last year
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- Sex assignment through coverage☆17Updated 8 months ago
- Tutorials on evolutionary genomics☆41Updated 2 years ago
- ☆15Updated 2 years ago
- Assessing confidence in introgression among four populations☆26Updated 3 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆10Updated last year
- ☆17Updated last year
- Graph-aware Retrieval of Selective Sweeps☆20Updated last month
- Scripts and resources for the haploblocks manuscript☆14Updated 4 years ago
- Hybridization detection using phylogenetic invariants☆41Updated last week
- Tools and Utilities for msmc and msmc2☆45Updated last year
- ☆17Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆54Updated 2 weeks ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- Scripts for population genetics analysis☆19Updated 2 years ago
- paml documentation and tutorials☆45Updated last year
- Repository for speciation genomics website☆24Updated 3 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated last month
- ☆15Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆11Updated 5 years ago