mourisl / T1KLinks
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
☆82Updated 2 months ago
Alternatives and similar repositories for T1K
Users that are interested in T1K are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- Somatic structural variant caller for long-read data☆79Updated 2 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆68Updated 5 months ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆98Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆134Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- ☆62Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 3 weeks ago
- ☆19Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 3 months ago
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆30Updated 8 months ago
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Tools for analyzing DNA methylation data☆43Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- ☆95Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago