RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of NGS and TGS data.
☆15Apr 22, 2024Updated last year
Alternatives and similar repositories for RegCloser
Users that are interested in RegCloser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- ☆31Apr 7, 2025Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆16Jul 25, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated 2 months ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 6 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- ☆18Jan 14, 2026Updated 3 months ago
- A tool for evaluating long-read de novo assembly results☆53Aug 25, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆17Jan 13, 2024Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 5 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆84Dec 3, 2025Updated 4 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- ☆26Dec 15, 2025Updated 3 months ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Synteny Mapping and Analysis Program☆30Apr 1, 2026Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.