csh3 / RegCloserLinks
RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of NGS and TGS data.
☆13Updated last year
Alternatives and similar repositories for RegCloser
Users that are interested in RegCloser are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆10Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆14Updated 10 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated this week
- ☆16Updated 2 years ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated 2 weeks ago
- SINE annotation tool for plant genomes☆17Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- parallelLastz: Running Lastz in parallel☆16Updated 8 months ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆14Updated last month
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆9Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated last month
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- Study of TE evolution in a population of genomes☆9Updated last year
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 8 months ago
- Identification of conserved non-coding sequences in plants☆17Updated last month
- Consensus genome annotation using OMA☆24Updated last month
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 7 months ago
- Gene Family Annotation Workflow☆11Updated last year
- Genome alignment and synteny plots☆30Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆9Updated 2 weeks ago
- ☆16Updated 5 months ago