zhpn1024 / ribotishLinks
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
☆41Updated 5 months ago
Alternatives and similar repositories for ribotish
Users that are interested in ribotish are comparing it to the libraries listed below
Sorting:
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 5 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆53Updated 2 weeks ago
- Full-length transcriptome splicing and mutation analysis☆83Updated 11 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆66Updated 7 months ago
- ☆59Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 5 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆73Updated last month
- release version☆53Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆37Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- A continually expanding collection of RNA-seq tools☆50Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆70Updated last month
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 weeks ago
- New version of JACUSA -> 2.0☆26Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- FRASER - Find RAre Splicing Events in RNA-seq☆46Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆75Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆56Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆69Updated last year
- A list of alternative splicing analysis resources☆43Updated 2 months ago