A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆63Jun 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Updated this week
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆107Updated this week
- ☆21Updated this week
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 4 months ago
- De novo construction of isoforms from long-read data☆38Jul 2, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆56Updated this week
- ☆115Jan 23, 2026Updated 6 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆59May 15, 2025Updated last year
- SingleCell Nanopore sequencing data analysis☆69May 30, 2025Updated last year
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Updated this week
- ☆25Jul 30, 2025Updated 11 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆70Apr 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- long read RNA-seq quantification☆116Updated this week
- ☆14Feb 17, 2022Updated 4 years ago
- PECAT, a phased error correct and assembly tool☆67Dec 8, 2025Updated 7 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆93Mar 6, 2026Updated 4 months ago
- ☆23Jul 15, 2026Updated last week
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Updated this week
- ☆44Mar 13, 2026Updated 4 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆16Jul 6, 2026Updated 2 weeks ago
- ☆15Dec 22, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27May 8, 2022Updated 4 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- ☆32Nov 2, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jul 7, 2026Updated 2 weeks ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆276Jul 7, 2026Updated 2 weeks ago
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated 3 months ago
- ☆67Mar 19, 2026Updated 4 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆160Jun 26, 2026Updated 3 weeks ago
- a long read simulator that can imitate many types of read problems☆294Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The Flexible Demultiplexer☆44Mar 30, 2026Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆53Oct 21, 2025Updated 9 months ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 4 months ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆94Jun 26, 2026Updated 3 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆38May 9, 2024Updated 2 years ago