A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆69Aug 13, 2026Updated 2 months ago
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆26Oct 27, 2026Updated last week
- ☆24Jul 30, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- SingleCell Nanopore sequencing data analysis☆73May 30, 2025Updated last year
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Single cell isoform heterogeneity and differential alternative splicing analysis☆14Sep 14, 2025Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 9 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆115Aug 18, 2026Updated 2 months ago
- A pipeline for Nanopore single cell isoform quantification in R☆14Oct 19, 2026Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆48Sep 9, 2026Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆278Updated this week
- long read RNA-seq quantification☆127Oct 24, 2026Updated last week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 26, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27Oct 1, 2026Updated last month
- Phage Annotation Workshop 2021☆14Dec 6, 2021Updated 4 years ago
- ☆68Mar 19, 2026Updated 7 months ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 3 years ago
- ☆45Mar 13, 2026Updated 7 months ago
- ☆16Dec 22, 2025Updated 10 months ago
- Isoform Identification and Quantification via Long Read RNA-Seq☆17Updated this week
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆78Apr 9, 2026Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆190Apr 12, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for the identification of (coding) gene structures in draft genomes.☆46Oct 8, 2026Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆283Updated this week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆293Jul 7, 2026Updated 3 months ago
- PECAT, a phased error correct and assembly tool☆69Dec 8, 2025Updated 10 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆17Oct 21, 2026Updated 2 weeks ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆174Mar 25, 2026Updated 7 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆101Mar 6, 2026Updated 7 months ago
- A universal toolkit for upstream processing of long RNA reads☆245Oct 27, 2026Updated last week
- The Flexible Demultiplexer☆47Sep 15, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BANKSY: spatial clustering☆171Updated this week
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.☆13Oct 10, 2026Updated 3 weeks ago
- Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.☆59Sep 26, 2026Updated last month
- ☆14Feb 17, 2022Updated 4 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆177Sep 15, 2026Updated last month
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago