mritchielab / FLAMES
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆34Updated last week
Alternatives and similar repositories for FLAMES:
Users that are interested in FLAMES are comparing it to the libraries listed below
- Single cell Nanopore sequencing data for Genotype and Phenotype☆51Updated 2 weeks ago
- Full-length transcriptome splicing and mutation analysis☆81Updated 10 months ago
- SingleCell Nanopore sequencing data analysis☆57Updated 4 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆68Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 2 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 4 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated last month
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated last month
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆19Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆61Updated last year
- ☆21Updated 2 weeks ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 3 months ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆18Updated this week
- The Flexible Demultiplexer☆30Updated 2 weeks ago
- FRASER - Find RAre Splicing Events in RNA-seq☆44Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated 3 weeks ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated 2 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆11Updated 2 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 5 years ago
- ☆61Updated 8 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago