A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆52Feb 19, 2026Updated last week
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below
Sorting:
- ☆27Nov 2, 2023Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆86Jun 24, 2024Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 9 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated 2 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- ☆22Jul 30, 2025Updated 7 months ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆34Jan 24, 2025Updated last year
- ☆41Dec 15, 2025Updated 2 months ago
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- ☆14Oct 24, 2025Updated 4 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆64Sep 19, 2025Updated 5 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆48Oct 21, 2025Updated 4 months ago
- ☆23May 21, 2025Updated 9 months ago
- ☆73Jun 2, 2023Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆85Feb 11, 2026Updated 2 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆48May 19, 2025Updated 9 months ago
- Telomere-to-Telomere diploid Indian Genome☆14Feb 11, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Implementation of ToL genome assembly workflows☆27Updated this week
- ☆106Jan 23, 2026Updated last month
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 10 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆27Feb 5, 2026Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 9 months ago
- Transposable element databases☆14Apr 7, 2022Updated 3 years ago
- A chromosomal visualization package for python.☆15Nov 21, 2023Updated 2 years ago
- ☆83Jan 16, 2026Updated last month
- Comparison of multiple long read datasets☆160Dec 2, 2025Updated 3 months ago
- Transcript assembly and quantification for RNA-Seq☆12Jun 3, 2019Updated 6 years ago
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆143Nov 24, 2025Updated 3 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆262Jul 12, 2025Updated 7 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Jul 9, 2025Updated 7 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Dec 14, 2025Updated 2 months ago
- long read RNA-seq quantification☆105Feb 4, 2026Updated 3 weeks ago