A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆54Apr 8, 2026Updated this week
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Jan 22, 2026Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated 3 weeks ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 10 months ago
- ☆22Jul 30, 2025Updated 8 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆99Dec 21, 2025Updated 3 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 10 months ago
- ☆31Nov 2, 2023Updated 2 years ago
- ☆106Jan 23, 2026Updated 2 months ago
- ☆14Dec 22, 2025Updated 3 months ago
- long read RNA-seq quantification☆108Mar 16, 2026Updated 3 weeks ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆90Mar 6, 2026Updated last month
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 10 months ago
- ☆13Feb 17, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆23May 21, 2025Updated 10 months ago
- ☆43Mar 13, 2026Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆269Mar 15, 2026Updated 3 weeks ago
- A chromosomal visualization package for python.☆15Nov 21, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- ☆14Oct 24, 2025Updated 5 months ago
- PECAT, a phased error correct and assembly tool☆62Dec 8, 2025Updated 4 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆51Oct 21, 2025Updated 5 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆149Jul 7, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated last month
- ☆30Mar 26, 2026Updated 2 weeks ago
- ☆20Oct 5, 2022Updated 3 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆83Apr 3, 2026Updated last week
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Mar 13, 2026Updated 3 weeks ago
- Repository☆10Oct 23, 2024Updated last year
- Evaluating genome assemblies☆119Mar 3, 2026Updated last month
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 11 months ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆36Jan 24, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Implementation of ToL genome assembly workflows☆30Apr 2, 2026Updated last week
- Small variant calling for haploid samples☆54Mar 3, 2026Updated last month
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆66Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆234Jul 9, 2025Updated 9 months ago
- Single-cell analysis methods in Rust☆33Nov 4, 2025Updated 5 months ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆108Apr 2, 2026Updated last week