mritchielab / FLAMESLinks
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆47Updated this week
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below
Sorting:
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- The Isoforms from Single-Cell; Long-read Expression Suite☆36Updated 11 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57Updated 7 months ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 8 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆39Updated 4 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated last month
- Builds a PEP from SRA or GEO accessions☆54Updated last month
- ☆24Updated 2 weeks ago
- A rust framework to make using alevin-fry even simpler☆60Updated 8 months ago
- IDR☆31Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- ☆15Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 3 months ago
- ☆40Updated 6 months ago
- ☆34Updated last month
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 11 months ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆94Updated 2 weeks ago
- FRASER - Find RAre Splicing Events in RNA-seq☆52Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Ultraperformant reimplementation of SICER☆58Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago