A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
☆53Feb 19, 2026Updated last month
Alternatives and similar repositories for FLAMES
Users that are interested in FLAMES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Jan 22, 2026Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆87Jun 24, 2024Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 10 months ago
- ☆22Jul 30, 2025Updated 7 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Dec 21, 2025Updated 3 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 9 months ago
- ☆29Nov 2, 2023Updated 2 years ago
- ☆14Dec 22, 2025Updated 3 months ago
- long read RNA-seq quantification☆106Mar 16, 2026Updated last week
- ☆106Jan 23, 2026Updated 2 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆88Mar 6, 2026Updated 2 weeks ago
- SingleCell Nanopore sequencing data analysis☆64May 30, 2025Updated 9 months ago
- ☆13Feb 17, 2022Updated 4 years ago
- ☆23May 21, 2025Updated 10 months ago
- ☆42Mar 13, 2026Updated last week
- ☆29Mar 13, 2026Updated last week
- A chromosomal visualization package for python.☆15Nov 21, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated last month
- ☆14Oct 24, 2025Updated 5 months ago
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 3 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆50Oct 21, 2025Updated 5 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆148Jul 7, 2025Updated 8 months ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 2 weeks ago
- ☆20Oct 5, 2022Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Mar 13, 2026Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆268Mar 15, 2026Updated last week
- Repository☆10Oct 23, 2024Updated last year
- Evaluating genome assemblies☆118Mar 3, 2026Updated 3 weeks ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆35Jan 24, 2025Updated last year
- Implementation of ToL genome assembly workflows☆28Updated this week
- Small variant calling for haploid samples☆51Mar 3, 2026Updated 3 weeks ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆66Sep 19, 2025Updated 6 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆233Jul 9, 2025Updated 8 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆240Mar 4, 2026Updated 2 weeks ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆108Updated this week