Alternatives and similar repositories for wf-amplicon

Users that are interested in wf-amplicon are comparing it to the libraries listed below

• mcfrith / last-genome-alignments
  ☆64Updated 2 years ago
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆68Updated 3 months ago
• epi2me-labs / wf-16s
  ☆33Updated 3 months ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆30Updated last year
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆39Updated this week
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆60Updated last week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆58Updated last year
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆120Updated this week
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated this week
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆117Updated 2 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆142Updated last month
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆42Updated last month
• epi2me-labs / wf-alignment
  ☆29Updated 3 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated last week
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆31Updated 2 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆58Updated 2 months ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated last month
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆78Updated last month
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆75Updated last week
• human-pangenomics / hprc_intermediate_assembly
  ☆35Updated last week
• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆50Updated last month
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated 3 months ago
• conchoecia / pauvre
  Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.
  ☆54Updated 9 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆101Updated 2 weeks ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆76Updated 4 months ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆99Updated 2 weeks ago
• gear-genomics / dicey
  In-silico PCR, primer design and padlock design for in-situ sequencing
  ☆51Updated last week
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆54Updated 3 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆83Updated last month