Alternatives and similar repositories for wf-amplicon

Users that are interested in wf-amplicon are comparing it to the libraries listed below

• epi2me-labs / wf-16s
  ☆40Updated 3 weeks ago
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆68Updated 7 months ago
• mcfrith / last-genome-alignments
  ☆69Updated 2 years ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆47Updated 3 weeks ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆75Updated last week
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆80Updated last month
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆31Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆148Updated 5 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆59Updated 2 months ago
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆35Updated 6 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆60Updated 2 years ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated 2 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆99Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆126Updated 3 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 3 weeks ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last year
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆134Updated 3 weeks ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 3 months ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆65Updated 7 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated last month
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 8 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆86Updated this week
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆102Updated last month
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 7 months ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated last week
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆41Updated last week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆86Updated 3 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆51Updated 3 weeks ago