☆45Mar 13, 2026Updated 2 months ago
Alternatives and similar repositories for wf-amplicon
Users that are interested in wf-amplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Small variant calling for haploid samples☆56Mar 3, 2026Updated 2 months ago
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 7 months ago
- ☆48Jan 23, 2026Updated 4 months ago
- ☆10Apr 16, 2025Updated last year
- ☆41Dec 15, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- ☆52Apr 10, 2026Updated last month
- ☆22Apr 28, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- ☆33Mar 9, 2026Updated 2 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆12Jan 6, 2023Updated 3 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆55Mar 4, 2026Updated 2 months ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63May 6, 2026Updated 3 weeks ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- ☆33Nov 2, 2023Updated 2 years ago
- ☆24Feb 2, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- ☆14Jun 30, 2021Updated 4 years ago
- Reference-based consensus creation☆61May 22, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- ☆102May 11, 2026Updated 2 weeks ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆24Mar 30, 2026Updated last month
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆92Mar 10, 2026Updated 2 months ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19May 21, 2026Updated last week
- Organism-specific interpretation of AMR genotypes☆17Mar 17, 2026Updated 2 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆130Jan 8, 2026Updated 4 months ago
- ☆21Nov 24, 2025Updated 6 months ago
- A simple pipeline for bacterial assembly and quality control☆16May 14, 2026Updated 2 weeks ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆34Jul 2, 2024Updated last year
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆19Mar 25, 2026Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago