☆44Mar 13, 2026Updated 5 months ago
Alternatives and similar repositories for wf-amplicon
Users that are interested in wf-amplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Small variant calling for haploid samples☆59Mar 3, 2026Updated 5 months ago
- ☆10Apr 16, 2025Updated last year
- ☆22Jun 1, 2026Updated 2 months ago
- ☆42Dec 15, 2025Updated 8 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆52Apr 10, 2026Updated 4 months ago
- ☆34Mar 9, 2026Updated 5 months ago
- ☆51Jan 23, 2026Updated 6 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆57Mar 4, 2026Updated 5 months ago
- ☆18Updated this week
- ☆15Jun 30, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Extract subsets of ONT (Nanopore) reads based on time☆25Sep 12, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆185Jul 21, 2026Updated 3 weeks ago
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Aug 10, 2026Updated last week
- ☆24Feb 2, 2026Updated 6 months ago
- Reference-based consensus creation☆61Updated this week
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo construction of isoforms from long-read data☆39Jul 2, 2026Updated last month
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Graph-based assembly phasing☆100Nov 25, 2025Updated 8 months ago
- A genome completeness evaluation tool based on miniprot☆260Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆86Updated this week
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆26Updated this week
- ☆22Nov 24, 2025Updated 8 months ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆64Updated this week
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 3 weeks ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆92Aug 6, 2026Updated last week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆130Jan 8, 2026Updated 7 months ago