Alternatives and similar repositories for wf-amplicon

Users that are interested in wf-amplicon are comparing it to the libraries listed below

• epi2me-labs / wf-16s
  ☆31Updated 2 months ago
• mcfrith / last-genome-alignments
  ☆63Updated 2 years ago
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆66Updated 2 months ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆29Updated last year
• epi2me-labs / wf-alignment
  ☆28Updated last month
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆37Updated last month
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆51Updated 3 weeks ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆114Updated last week
• aljpetri / isONform
  De novo construction of isoforms from long-read data
  ☆31Updated 2 weeks ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated 3 weeks ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 8 months ago
• mobinasri / flagger
  Evaluating genome assemblies
  ☆97Updated last week
• jonathancrabtree / Circleator
  Flexible circular visualization of genome-associated data with BioPerl and SVG.
  ☆47Updated 6 years ago
• schmeing / ReSeq
  More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
  ☆52Updated 2 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated 11 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 4 months ago
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆38Updated 3 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆138Updated 4 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆116Updated 5 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆75Updated 3 weeks ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆85Updated last month
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆34Updated this week
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆76Updated last week
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆53Updated this week
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆74Updated 11 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆106Updated 3 weeks ago