epi2me-labs / wf-ampliconLinks
☆41Updated last month
Alternatives and similar repositories for wf-amplicon
Users that are interested in wf-amplicon are comparing it to the libraries listed below
Sorting:
- De novo clustering of long transcript reads into genes☆70Updated 9 months ago
- ☆41Updated last week
- ☆71Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆35Updated last year
- Small variant calling for haploid samples☆48Updated 3 weeks ago
- ☆82Updated 2 weeks ago
- De novo construction of isoforms from long-read data☆35Updated 7 months ago
- cDNA read preprocessing☆83Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Updated last year
- Simple bacterial assembly and annotation pipeline☆81Updated last week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 4 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆158Updated 6 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆140Updated 2 months ago
- PECAT, a phased error correct and assembly tool☆59Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆131Updated 3 years ago
- A Nextflow pipeline for evaluating assembly quality☆38Updated 2 months ago
- Microbiome classification pipeline☆65Updated 8 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- ☆27Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated this week
- ☆43Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- ☆32Updated 2 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated 2 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Best practices and workflow for genome annotation☆79Updated 9 months ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆85Updated this week
- Metagenomic classification of long-read sequencing data☆99Updated last week