☆104Jun 17, 2026Updated this week
Alternatives and similar repositories for mobilome-annotation-pipeline
Users that are interested in mobilome-annotation-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 12, 2026Updated last week
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 7 months ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆199Jun 10, 2026Updated last week
- Systematic search of all known anti-phage systems.☆173May 5, 2026Updated last month
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- ☆15Feb 10, 2025Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆111Dec 5, 2025Updated 6 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆311Feb 3, 2026Updated 4 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 3 weeks ago
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated last year
- ☆32Nov 2, 2023Updated 2 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆226May 27, 2026Updated 3 weeks ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 6 months ago
- A user-friendly workflow for phylogenomics☆230May 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated last month
- Creating plasmid maps inside ggplot.☆92Sep 2, 2025Updated 9 months ago
- Similarity networks of biosynthetic gene clusters☆172Apr 1, 2026Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- code repo for mobileOG-db☆49Nov 6, 2025Updated 7 months ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 4 months ago
- ☆253Jun 2, 2026Updated 2 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Jun 9, 2026Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆107Jun 25, 2023Updated 2 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Jun 4, 2026Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆94May 3, 2025Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago