Alternatives and similar repositories for mobilome-annotation-pipeline

Users that are interested in mobilome-annotation-pipeline are comparing it to the libraries listed below

• bvalot / pyMLST
  whole genome MLST analysis
  ☆42Updated last month
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆83Updated 2 weeks ago
• HubertTang / PLASMe
  ☆27Updated last year
• epi2me-labs / wf-16s
  ☆30Updated last month
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆62Updated 2 years ago
• Carrion-lab / bacLIFE
  ☆46Updated 2 months ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆35Updated 2 weeks ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆62Updated 4 months ago
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆42Updated 6 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated last year
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 4 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 7 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆63Updated 2 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 3 weeks ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆42Updated last month
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆51Updated last year
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated 2 weeks ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 7 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 9 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆94Updated 7 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆57Updated this week
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆57Updated last month
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆53Updated 2 weeks ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆52Updated 5 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 10 months ago
• AuReMe / emapper2gbk
  Convert GFF, fastas, annotation table and species name into Genbank.
  ☆14Updated this week
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆24Updated 3 years ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆49Updated 3 months ago
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆66Updated this week