phac-nml / staramr
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
☆115Updated 2 months ago
Related projects: ⓘ
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆104Updated 10 months ago
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆125Updated 3 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆165Updated last week
- Pan-genome wide association studies☆147Updated 3 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆187Updated last month
- DAS Tool☆137Updated 4 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆174Updated 2 months ago
- An updated pipeline for pangenome investigation☆260Updated 5 months ago
- A user-friendly workflow for phylogenomics☆197Updated last week
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆104Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆143Updated 9 months ago
- ☆113Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆105Updated 10 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆159Updated 2 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆104Updated last year
- Fast and accurately polish the genome generated by long reads.☆205Updated 10 months ago
- Bacterial ribosomal RNA predictor☆218Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆212Updated 10 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆113Updated 4 months ago
- Antibiotic resistance prediction in minutes☆106Updated 3 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆117Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆132Updated 11 months ago
- BSR-Based Allele Calling Algorithm☆129Updated last week
- Filtering and trimming of long read sequencing data☆184Updated last year
- fast phage annotation program☆144Updated 2 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆126Updated 6 months ago
- Pipeline for metabolic annotation of microbial genomes☆138Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆210Updated last year
- Bioinformatics program inStrain☆137Updated 4 months ago