Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
☆209Jun 10, 2026Updated 4 months ago
Alternatives and similar repositories for staramr
Users that are interested in staramr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆516Jul 17, 2026Updated 3 months ago
- ☆120Oct 16, 2026Updated 2 weeks ago
- Scan contig files against PubMLST typing schemes☆307Jun 17, 2026Updated 4 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆436Oct 17, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- geNomad: Identification of mobile genetic elements☆340Oct 14, 2026Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 2, 2026Updated 3 weeks ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Oct 22, 2026Updated last week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BSR-Based Allele Calling Algorithm☆153Oct 8, 2026Updated 3 weeks ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- An updated pipeline for pangenome investigation☆378Updated this week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- ☆151Oct 11, 2026Updated 2 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 21, 2026Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆96May 3, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Short Read Sequence Typing for Bacterial Pathogens☆153Jun 20, 2021Updated 5 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated last month
- ☆36Nov 2, 2023Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 6 months ago
- Rapid comparison and dereplication of genomes☆360Oct 9, 2026Updated 3 weeks ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆312Oct 21, 2026Updated last week