Alternatives and similar repositories for staramr

Users that are interested in staramr are comparing it to the libraries listed below

• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆205Updated last year
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆155Updated 8 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆224Updated 3 weeks ago
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆220Updated 3 weeks ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆147Updated 3 weeks ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆201Updated 4 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆159Updated 6 months ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆290Updated 3 weeks ago
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆181Updated 8 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆334Updated this week
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 9 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆273Updated 2 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆198Updated 3 months ago
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆309Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆97Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆123Updated 2 years ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆278Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated 3 weeks ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆164Updated 3 months ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆145Updated 3 weeks ago
• cmks / DAS_Tool
  DAS Tool
  ☆163Updated last year
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆324Updated last month
• katholt / srst2
  Short Read Sequence Typing for Bacterial Pathogens
  ☆145Updated 4 years ago
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆211Updated 11 months ago
• jodyphelan / TBProfiler
  Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
  ☆128Updated last month
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆181Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆142Updated 2 years ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆164Updated 8 months ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆153Updated last year
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆186Updated last month