xing-lab-pitt / GraphVeloLinks
Inferring multi-modality dynamics for single cell genomics data
☆12Updated 3 months ago
Alternatives and similar repositories for GraphVelo
Users that are interested in GraphVelo are comparing it to the libraries listed below
Sorting:
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- ☆20Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆25Updated 6 months ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆38Updated 2 months ago
- Fast motif matching in R☆46Updated last year
- A python package for chromVAR☆31Updated 2 years ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆58Updated last year
- Tools for assessing clustering robustness☆28Updated last month
- Molecular interactions inference from single-cell multi-omics data☆27Updated last week
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Updated 3 years ago
- Transposable element databases☆13Updated 3 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆17Updated 6 months ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Updated 2 years ago
- ☆51Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 2 weeks ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Toolkit for single-cell DNA methylation analysis.☆43Updated 3 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆43Updated 5 months ago
- model-based understanding of single-cell CRISPR screening☆25Updated 10 months ago
- An R package for performing cell typing in SMI and other single cell data☆43Updated 5 months ago
- TF analysis from epigenetic and Hi-C data☆18Updated 7 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆52Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- ☆18Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 3 months ago
- ☆35Updated 3 years ago