Alternatives and similar repositories for GraphVelo

Users that are interested in GraphVelo are comparing it to the libraries listed below

• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 8 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 8 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 2 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• mlbendall / telescope_annotation_db
  Transposable element databases
  ☆13Updated 3 years ago
• ajaynadig / TRADEtools
  ☆35Updated 9 months ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆44Updated 7 months ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated this week
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆31Updated 2 years ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆74Updated 6 months ago
• cellatlas / human
  ☆44Updated last year
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 4 years ago
• FredPont / spatial
  Single-Cell Spatial Explorer
  ☆15Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• Nanostring-Biostats / CosMx-Cell-Profiles
  CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.
  ☆27Updated 10 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated last month
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆20Updated last year
• buenrostrolab / PRINT
  ☆20Updated last week
• yxwucq / scExtract
  Automatic annotation of single-cell RNA-seq data from the literature
  ☆38Updated 5 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• UPSUTER / GEMLI
  ☆32Updated 10 months ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆24Updated 3 years ago
• JSB-UCLA / scDEED
  Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings
  ☆45Updated 7 months ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆45Updated last week
• marcovito / sma
  ☆15Updated 2 years ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆22Updated 3 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• satijalab / Mixscale
  ☆23Updated 2 months ago