esayyari / DiscoVista

Related projects ⓘ

Alternatives and complementary repositories for DiscoVista

• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆31Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated last month
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated last year
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆42Updated 3 weeks ago
• clairemerot / angsd_pipeline
  ☆25Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 8 months ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆18Updated 10 months ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆16Updated 8 months ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆16Updated 2 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆30Updated 8 months ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆44Updated 5 years ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆24Updated 8 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆40Updated 5 years ago
• gwct / grampa
  Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
  ☆11Updated last year
• FePhyFoFum / SortaDate
  ☆16Updated 3 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆73Updated 2 years ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆14Updated 2 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆32Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆54Updated last month
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆41Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 4 months ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆33Updated 3 years ago
• YuboZhangPKU / ERICA
  ☆18Updated last year