blackrim / treePLLinks
Phylogenetic penalized likelihood
☆54Updated 6 months ago
Alternatives and similar repositories for treePL
Users that are interested in treePL are comparing it to the libraries listed below
Sorting:
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- ☆18Updated 5 years ago
- ☆42Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 years ago
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 7 months ago
- ☆13Updated 9 months ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- ☆20Updated 4 months ago
- spruceup☆25Updated 4 months ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- An R Package to build and simulate coalescent models☆20Updated 3 months ago
- Repository for speciation genomics website☆27Updated 3 months ago
- ☆19Updated 7 years ago
- RADseq workflow using STACKS☆61Updated last month
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Population assignment analysis using R☆15Updated 5 months ago
- association analysis of distance matrices using gradient forest approach☆16Updated 2 months ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆21Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆17Updated 3 weeks ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆70Updated 4 years ago