Alternatives and similar repositories for treePL:

Users that are interested in treePL are comparing it to the libraries listed below

• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated 11 months ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 4 months ago
• Capblancq / RDA-landscape-genomics
  ☆31Updated 3 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 weeks ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 2 years ago
• esayyari / DiscoVista
  ☆39Updated last year
• rbouckaert / starbeast3
  ☆17Updated 7 months ago
• lmcai / PhyloHerb
  PHYLOgenomic analysis pipeline for HERBarium specimens
  ☆17Updated last year
• rufimov / ParalogWizard
  ☆13Updated 3 weeks ago
• nstenz / TICR
  ☆26Updated 4 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 3 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆25Updated this week
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆28Updated last year
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 5 months ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 4 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆17Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆15Updated 2 months ago
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 5 years ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆13Updated 4 months ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆33Updated 7 years ago
• sjoleary / SNPFILT
  ☆18Updated 7 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 8 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week