Alternatives and similar repositories for Dsuite:

Users that are interested in Dsuite are comparing it to the libraries listed below

• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆165Updated last year
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆149Updated 9 months ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆90Updated last year
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆121Updated 4 months ago
• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆166Updated 2 years ago
• nt246 / lcwgs-guide-tutorial
  ☆85Updated 3 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆122Updated 6 months ago
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆146Updated 6 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆131Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆181Updated 2 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆78Updated 4 months ago
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆129Updated last week
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆96Updated 2 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆102Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆112Updated 4 years ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆93Updated last month
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆108Updated 6 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆95Updated 2 months ago
• jtlovell / GENESPACE
  ☆206Updated 3 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆151Updated 3 years ago
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆73Updated 3 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆176Updated 6 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆127Updated 3 weeks ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago