Alternatives and similar repositories for Dsuite

Users that are interested in Dsuite are comparing it to the libraries listed below

• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆167Updated last year
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆131Updated last month
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆92Updated last year
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 4 months ago
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆148Updated 3 weeks ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆67Updated last year
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆163Updated last year
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆151Updated 9 months ago
• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆175Updated 2 weeks ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆133Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated 10 months ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆179Updated last month
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 6 months ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆161Updated last year
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• jtlovell / GENESPACE
  ☆222Updated 9 months ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆124Updated 2 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆100Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆119Updated last year
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 2 months ago
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆114Updated 4 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆150Updated 8 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated this week
• MetazoaPhylogenomicsLab / FANTASIA
  ☆30Updated 2 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated last year
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆81Updated 4 months ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆102Updated last month
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆107Updated 2 weeks ago