ComparativeGenomicsToolkit / neutral-model-estimator
Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
☆11Updated 5 years ago
Alternatives and similar repositories for neutral-model-estimator:
Users that are interested in neutral-model-estimator are comparing it to the libraries listed below
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 6 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- ☆12Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- ☆14Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Centromics: visualing centromeres with multiple omics data☆22Updated last month
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Deleterious mutation prediction pipeline☆13Updated 4 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆15Updated 5 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 5 months ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- ☆27Updated 2 weeks ago
- Genome alignment and synteny plots☆30Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆24Updated 2 years ago
- ☆12Updated 5 years ago
- ☆22Updated last year