Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
☆11Jan 17, 2020Updated 6 years ago
Alternatives and similar repositories for neutral-model-estimator
Users that are interested in neutral-model-estimator are comparing it to the libraries listed below
Sorting:
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Newick tree processing☆13Feb 22, 2026Updated last week
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 3 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆11Oct 23, 2019Updated 6 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Feb 13, 2020Updated 6 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- ☆13Jan 20, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Useful bioinformatic scripts☆60Nov 26, 2024Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆35Feb 4, 2026Updated 3 weeks ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Oct 16, 2023Updated 2 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- Scaffolding with Ultralong Reads☆15Nov 11, 2020Updated 5 years ago