ComparativeGenomicsToolkit / neutral-model-estimatorLinks
Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
☆11Updated 5 years ago
Alternatives and similar repositories for neutral-model-estimator
Users that are interested in neutral-model-estimator are comparing it to the libraries listed below
Sorting:
- ☆16Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated 8 months ago
- ☆15Updated 5 years ago
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- ☆12Updated 2 years ago
- Study of TE evolution in a population of genomes☆9Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- ☆27Updated 3 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Scripts used in the annotation of B10K genomes☆15Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month