symgenoevolab / SyntenyFinder
SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-level genome assemblies from NCBI and offers customization options for local datasets.
☆30Updated 3 months ago
Alternatives and similar repositories for SyntenyFinder:
Users that are interested in SyntenyFinder are comparing it to the libraries listed below
- Genome Annotation Pipeline☆35Updated 8 months ago
- ☆28Updated last year
- ☆19Updated 2 years ago
- Multi-genome synteny block visualization tool☆36Updated 3 months ago
- ☆40Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- ☆23Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆18Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆29Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆40Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 10 months ago
- ☆9Updated 4 years ago
- ☆20Updated 9 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆32Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- ☆29Updated 4 months ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago