Alternatives and similar repositories for SyntenyFinder:

Users that are interested in SyntenyFinder are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 8 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 9 months ago
• jkimlab / DESCHRAMBLER
  ☆23Updated last year
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Argonum-Clever2 / mike
  ☆29Updated last month
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆17Updated this week
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆9Updated 2 months ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated 2 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 8 months ago
• lardo / khaper
  ☆27Updated 2 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 2 weeks ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• i10labtitech / GINGER
  ☆28Updated last year
• hsigeman / findZX
  ☆19Updated 2 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated 2 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆33Updated 3 months ago
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆16Updated 5 months ago
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• yanyew / SynGAP
  ☆32Updated 5 months ago
• Dee-chen / Tree2gd
  ☆40Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆26Updated 2 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated last month
• kavonrtep / dante_ltr
  ☆10Updated 5 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 2 months ago