SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-level genome assemblies from NCBI and offers customization options for local datasets.
☆35Jan 15, 2025Updated last year
Alternatives and similar repositories for SyntenyFinder
Users that are interested in SyntenyFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Genome alignment and synteny plots☆34Mar 24, 2026Updated last month
- Phylogenetic profiling with orthology data☆13Apr 21, 2026Updated last week
- This is the standalone version of the EviAnn pipeline☆144Apr 21, 2026Updated last week
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆14Apr 20, 2026Updated last week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆30Feb 23, 2026Updated 2 months ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14May 18, 2023Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Apr 16, 2026Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 4 months ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated last month
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- ☆16Apr 16, 2026Updated last week
- An easy-to-use python package can be used for genomic visual analysis☆22Apr 20, 2024Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).☆21Sep 9, 2021Updated 4 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Apr 16, 2026Updated last week
- oxford dot plots☆170Apr 21, 2026Updated last week
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated last year
- Analyzing combinations of codon substitution histories☆46Apr 7, 2026Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Apr 13, 2026Updated 2 weeks ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Mar 28, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆89Apr 13, 2026Updated 2 weeks ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 2 months ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆30Apr 2, 2026Updated 3 weeks ago
- ☆12Sep 6, 2019Updated 6 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 10 months ago