symgenoevolab / SyntenyFinderLinks
SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-level genome assemblies from NCBI and offers customization options for local datasets.
☆31Updated 5 months ago
Alternatives and similar repositories for SyntenyFinder
Users that are interested in SyntenyFinder are comparing it to the libraries listed below
Sorting:
- ☆40Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- ☆30Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆41Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆21Updated 11 months ago
- ☆28Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆24Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆22Updated 3 weeks ago
- ☆30Updated 6 months ago
- ☆33Updated 10 months ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆28Updated last month
- A tool for quick and accurate calculation of syntenic diversity.☆39Updated 5 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last month
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- ☆22Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- HiCAT new project☆28Updated last month
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆28Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago