mmatschiner / tutorialsLinks
Tutorials on phylogenetic and phylogenomic inference
☆393Updated 2 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- General tools for genomic analyses.☆385Updated 11 months ago
- A complete pipeline for metagenomic analysis☆441Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- Rapid large-scale prokaryote pan genome analysis☆368Updated 3 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆375Updated 3 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆368Updated 11 months ago
- Fast and accurate de novo assembler for long reads☆398Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- Genome assembly evaluation tool☆494Updated last year
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- TransDecoder source☆299Updated 4 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 6 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆275Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆456Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- ☆347Updated 11 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆553Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆525Updated 2 years ago
- quality filtering tool for long reads☆387Updated 4 months ago
- Synteny and Rearrangement Identifier☆446Updated 9 months ago
- Bacterial ribosomal RNA predictor☆279Updated 3 weeks ago
- 🌈 Interactive analysis of metagenomics data☆442Updated 4 months ago
- Finds SNP sites from a multi-FASTA alignment file☆273Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- Sequence correction provided by ONT Research☆499Updated 2 months ago
- Plotting scripts for long read sequencing data☆528Updated 2 months ago
- Mummer alignment tool☆548Updated last year