mmatschiner / tutorialsLinks
Tutorials on phylogenetic and phylogenomic inference
☆390Updated 2 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆320Updated 2 years ago
- General tools for genomic analyses.☆378Updated 8 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆395Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- Rapid large-scale prokaryote pan genome analysis☆357Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆448Updated 2 years ago
- A complete pipeline for metagenomic analysis☆438Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆432Updated last month
- TransDecoder source☆298Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆355Updated 3 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆355Updated 9 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆450Updated last year
- adapter trimmer for Oxford Nanopore reads☆375Updated last year
- Plotting scripts for long read sequencing data☆511Updated 2 months ago
- Finds SNP sites from a multi-FASTA alignment file☆268Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated last month
- Genome assembly evaluation tool☆480Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆538Updated last year
- 🌈 Interactive analysis of metagenomics data☆434Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- ☆346Updated 8 months ago
- Fast and accurate de novo assembler for long reads☆396Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆394Updated 3 weeks ago
- Rapid haploid variant calling and core genome alignment☆551Updated last year
- quality filtering tool for long reads☆374Updated 2 months ago
- Sequence correction provided by ONT Research☆486Updated 3 months ago