simonhmartin / twisstLinks
Topology weighting by iterative sampling of sub-trees
☆82Updated 11 months ago
Alternatives and similar repositories for twisst
Users that are interested in twisst are comparing it to the libraries listed below
Sorting:
- Hybridization detection using phylogenetic invariants☆52Updated last year
- MSMC2 Scripts☆28Updated 3 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- ☆42Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Presentations from the course☆38Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 3 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated last week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- Recovering genes from targeted sequence capture data☆130Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- RADseq workflow using STACKS☆61Updated last month
- ☆30Updated 2 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆76Updated 3 weeks ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆64Updated last month