Topology weighting by iterative sampling of sub-trees
☆86Jan 5, 2025Updated last year
Alternatives and similar repositories for twisst
Users that are interested in twisst are comparing it to the libraries listed below
Sorting:
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 3 years ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated last year
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- ☆23May 26, 2023Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Software package for estimating fine-scale recombination rate.☆17Jun 8, 2021Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆22Dec 16, 2025Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆226Jan 4, 2026Updated 2 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆170Aug 8, 2024Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- ☆22Oct 31, 2025Updated 4 months ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- ☆18Dec 5, 2020Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- Tutorials on phylogenetic and phylogenomic inference☆394Sep 13, 2023Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Feb 17, 2026Updated 2 weeks ago
- ☆26Apr 14, 2021Updated 4 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆30Sep 27, 2019Updated 6 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 10 months ago