simonhmartin / twisst
Topology weighting by iterative sampling of sub-trees
☆73Updated 2 weeks ago
Alternatives and similar repositories for twisst:
Users that are interested in twisst are comparing it to the libraries listed below
- MSMC2 Scripts☆23Updated 10 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆63Updated 8 months ago
- Hybridization detection using phylogenetic invariants☆44Updated 2 months ago
- RADseq workflow using STACKS☆57Updated last month
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆56Updated 2 months ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- Tutorials on phylogenetic and phylogenomic inference☆41Updated 8 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last week
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- ☆26Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- ☆38Updated last year
- feature-based deep learning for the identification of selective sweeps☆51Updated 4 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 9 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆166Updated 3 weeks ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆15Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆58Updated 3 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Scripts for analysis used during the course☆85Updated 8 months ago
- Repository for speciation genomics website☆24Updated 5 months ago
- ☆79Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆14Updated last month
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆67Updated 2 weeks ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆47Updated 6 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago