aewebb80 / VESPALinks
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
☆15Updated 3 years ago
Alternatives and similar repositories for VESPA
Users that are interested in VESPA are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- transposable element typing pipeline☆18Updated last year
- Parallel implementation of OrthoMCL☆21Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- ☆26Updated 4 years ago
- Read contamination removal☆25Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago
- Visualising discordant reads☆15Updated 9 years ago
- genomic alignment similarity search tool☆18Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 4 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 weeks ago