aewebb80 / VESPALinks
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
☆15Updated 3 years ago
Alternatives and similar repositories for VESPA
Users that are interested in VESPA are comparing it to the libraries listed below
Sorting:
- Read contamination removal☆25Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ☆26Updated 4 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Better Alignments with Translated HMMER☆23Updated last month
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 6 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Reference genome quality scores☆21Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago