Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.
☆16May 19, 2017Updated 8 years ago
Alternatives and similar repositories for KewHybSeqWorkshop
Users that are interested in KewHybSeqWorkshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 2 months ago
- Data and scripts used in the oneKP capstone analyses☆13Apr 5, 2022Updated 3 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆44Sep 5, 2023Updated 2 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 6 years ago
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated last year
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆14Mar 9, 2026Updated 2 weeks ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- spruceup☆25Aug 15, 2025Updated 7 months ago
- ☆14Mar 18, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated last week
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- This repository contains the R codes and relevant data for performing the S.PhyloMaker function.☆15Sep 22, 2020Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- ☆26Apr 14, 2021Updated 4 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- ☆21Dec 30, 2025Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- comprehensive dated seed plants made with genbank and opentree☆19May 10, 2018Updated 7 years ago
- ☆22Oct 31, 2025Updated 4 months ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆23Updated this week
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Accurate Species TRee ALgorithm☆275Apr 1, 2024Updated last year
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Jun 16, 2021Updated 4 years ago
- Transform EQL detection rules to VQL artifacts☆12Nov 12, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- TD2☆35Jan 14, 2026Updated 2 months ago
- ☆12Mar 8, 2024Updated 2 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- ☆12Jan 29, 2025Updated last year