Alternatives and similar repositories for HybPhaser

Users that are interested in HybPhaser are comparing it to the libraries listed below

• rufimov / ParalogWizard
  ☆13Updated 10 months ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 2 weeks ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆54Updated 6 months ago
• esayyari / DiscoVista
  ☆43Updated 2 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated last year
• FePhyFoFum / SortaDate
  ☆18Updated 5 years ago
• Capblancq / RDA-landscape-genomics
  ☆34Updated 4 years ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated 3 months ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆15Updated last month
• z0on / RDA-forest
  association analysis of distance matrices using gradient forest approach
  ☆16Updated 3 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆61Updated last week
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated 2 years ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆111Updated last week
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆17Updated 3 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆52Updated last year
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 6 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆67Updated last year
• BenjaminPeter / rangeexpansion
  ☆14Updated 8 years ago
• dportik / MonoPhylo
  A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
  ☆10Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆24Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• BenoitMorel / GeneRax
  ☆77Updated 7 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆56Updated 3 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆28Updated 4 months ago
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆19Updated last year
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆21Updated 4 years ago