gphocs-dev / G-PhoCS
G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
☆34Updated 3 years ago
Alternatives and similar repositories for G-PhoCS:
Users that are interested in G-PhoCS are comparing it to the libraries listed below
- ☆38Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- ☆19Updated 2 years ago
- ☆12Updated 5 years ago
- ☆26Updated last year
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- Scripts for population genetics analysis☆19Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- MSMC2 Scripts☆23Updated 10 months ago
- Infer demographic history with the Moran model☆47Updated 10 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 3 weeks ago
- ☆24Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- ☆18Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆13Updated last week
- GONE: Scripts, programs and an example data set☆43Updated last year
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆16Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- ☆18Updated last year
- Population genetics analyses from NGS data☆25Updated 3 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆15Updated this week
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago
- Joint inference of heterozygosity rates and runs of homozygosity☆11Updated 4 months ago