Alternatives and similar repositories for G-PhoCS

Users that are interested in G-PhoCS are comparing it to the libraries listed below

• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 8 months ago
• esayyari / DiscoVista
  ☆39Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆17Updated last year
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 2 months ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• hsigeman / findZX
  ☆19Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆50Updated 6 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• clairemerot / angsd_pipeline
  ☆26Updated last year
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year
• zhangfumin / domestication
  ☆18Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 10 months ago
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated 7 months ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 3 months ago
• Argonum-Clever2 / mike
  ☆29Updated last month