G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
☆34Apr 27, 2021Updated 4 years ago
Alternatives and similar repositories for G-PhoCS
Users that are interested in G-PhoCS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- GONE: Scripts, programs and an example data set☆53Jul 20, 2025Updated 8 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Jan 6, 2022Updated 4 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- ☆45Sep 5, 2023Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last month
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tutorials on evolutionary genomics☆47Mar 11, 2022Updated 4 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 3 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Short scripts for converting genetic data between formats.☆30Nov 11, 2022Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 11 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Topology weighting from unphased genotypes of any ploidy☆23Mar 19, 2026Updated 3 weeks ago
- General tools for genomic analyses.☆389Mar 25, 2026Updated 2 weeks ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 9 months ago
- ☆13Apr 30, 2019Updated 6 years ago
- Tutorials on phylogenetic and phylogenomic inference☆397Sep 13, 2023Updated 2 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆30Jan 19, 2019Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆68Dec 5, 2022Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆54Jul 18, 2018Updated 7 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- ☆13Mar 7, 2021Updated 5 years ago
- Tools test whether admixture occurred and more☆223Sep 6, 2024Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆19Dec 12, 2025Updated 4 months ago