chaoszhang / ASTERLinks
Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
☆190Updated this week
Alternatives and similar repositories for ASTER
Users that are interested in ASTER are comparing it to the libraries listed below
Sorting:
- Any Way to Show Multi genomic Synteny☆201Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆163Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆138Updated 6 months ago
- ☆213Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆216Updated 3 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- oxford dot plots☆157Updated last month
- Yet another Hi-C scaffolding tool☆158Updated 9 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆208Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆145Updated 6 months ago
- Foreign Contamination Screening caller scripts and documentation☆133Updated 4 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆177Updated 3 weeks ago
- ☆205Updated last week
- a short-read polishing tool for long-read assemblies☆173Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆147Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆175Updated 7 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 3 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆223Updated last month
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- Accurate Species TRee ALgorithm☆264Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆192Updated 2 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆144Updated 2 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆141Updated 7 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆105Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆168Updated this week