Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
☆241Apr 30, 2026Updated this week
Alternatives and similar repositories for ASTER
Users that are interested in ASTER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate Species TRee ALgorithm☆278Apr 1, 2024Updated 2 years ago
- ☆16Apr 11, 2026Updated 3 weeks ago
- Visualing species tree from ASTRAL with gene tree discordance☆30May 13, 2025Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆144Apr 24, 2026Updated last week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆192Jan 29, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆239Sep 18, 2025Updated 7 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Apr 13, 2026Updated 3 weeks ago
- Implementation of the TreeShrink problem☆56Apr 28, 2026Updated last week
- Official home of genome aligner based upon notion of Cactus graphs☆675Updated this week
- ☆42Apr 2, 2024Updated 2 years ago
- spruceup☆25Aug 15, 2025Updated 8 months ago
- Topology weighting by iterative sampling of sub-trees☆87Jan 5, 2025Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆259Apr 29, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Robust identification of orthologous Synteny with the Orthology Index☆42Updated this week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆191Oct 15, 2025Updated 6 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 6 months ago
- Neural network classification of TE☆99Apr 3, 2026Updated last month
- FastOMA is a scalable software package to infer orthology relationship.☆97Apr 24, 2026Updated last week
- source code for EVM☆124Nov 29, 2024Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆84Apr 19, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- ☆46Sep 5, 2023Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆457Apr 12, 2026Updated 3 weeks ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Synteny and Rearrangement Identifier☆463Mar 17, 2026Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Version 5 of the CAFE phylogenetics software☆166Mar 16, 2026Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆463Apr 27, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 3 months ago
- ☆24Mar 17, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆41Apr 13, 2026Updated 3 weeks ago
- Tutorials on phylogenetic and phylogenomic inference☆397Apr 12, 2026Updated 3 weeks ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆89Apr 13, 2026Updated 3 weeks ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year