Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
☆236Mar 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for ASTER
Users that are interested in ASTER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate Species TRee ALgorithm☆277Apr 1, 2024Updated 2 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆30May 13, 2025Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆143Apr 2, 2026Updated last week
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆192Jan 29, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 6 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- Implementation of the TreeShrink problem☆55Sep 13, 2024Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆671Apr 3, 2026Updated last week
- ☆42Apr 2, 2024Updated 2 years ago
- spruceup☆25Aug 15, 2025Updated 8 months ago
- Topology weighting by iterative sampling of sub-trees☆87Jan 5, 2025Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆255Apr 9, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Robust identification of orthologous Synteny with the Orthology Index☆41Mar 1, 2026Updated last month
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 6 months ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- Neural network classification of TE☆98Apr 3, 2026Updated last week
- FastOMA is a scalable software package to infer orthology relationship.☆93Mar 26, 2026Updated 2 weeks ago
- source code for EVM☆123Nov 29, 2024Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆84Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- ☆46Sep 5, 2023Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆455Apr 7, 2026Updated last week
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 11 months ago
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated 3 weeks ago
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆462Apr 8, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recovering genes from targeted sequence capture data☆134Jan 9, 2026Updated 3 months ago
- ☆24Mar 17, 2026Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Feb 24, 2026Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆41Mar 26, 2026Updated 3 weeks ago
- Tutorials on phylogenetic and phylogenomic inference☆397Updated this week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆89Mar 31, 2026Updated 2 weeks ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year