pblischak / HyDeLinks
Hybridization detection using phylogenetic invariants
☆48Updated 10 months ago
Alternatives and similar repositories for HyDe
Users that are interested in HyDe are comparing it to the libraries listed below
Sorting:
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆81Updated 8 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- ☆41Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- MSMC2 Scripts☆26Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- GONE: Scripts, programs and an example data set☆46Updated 2 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 8 months ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆15Updated last month
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆23Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆69Updated last week
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆14Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆18Updated 4 months ago
- Presentations from the course☆37Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago