A program for multimodel inference on speciation and trait evolution
☆35Sep 4, 2017Updated 8 years ago
Alternatives and similar repositories for bamm
Users that are interested in bamm are comparing it to the libraries listed below
Sorting:
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- phylogenetic comparative method☆11Jan 9, 2026Updated last month
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- ☆17Oct 21, 2024Updated last year
- DPPDIV☆12Apr 10, 2020Updated 5 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆26Jan 26, 2026Updated last month
- Phylogenetic ANalyses of DiversificAtion☆27Jan 27, 2026Updated last month
- ☆44Sep 5, 2023Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 5 years ago
- ☆36Updated this week
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Dec 10, 2024Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆21Jan 21, 2026Updated last month
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 4 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 3 months ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Jun 16, 2021Updated 4 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆11Feb 19, 2026Updated last week
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- Newick tree processing☆13Feb 22, 2026Updated last week
- ☆13Nov 15, 2017Updated 8 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- ☆26Updated this week