DessimozLab / edgehogLinks
Infering ancestral synteny with hierarchical orthologous groups
☆24Updated 2 weeks ago
Alternatives and similar repositories for edgehog
Users that are interested in edgehog are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- Better Alignments with Translated HMMER☆21Updated this week
- Genome alignment and synteny plots☆31Updated 2 years ago
- ☆26Updated last year
- ☆16Updated 2 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 2 weeks ago
- SINE annotation tool for plant genomes☆18Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- The MafFilter genome alignment processor☆19Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- ☆21Updated this week
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Genome Assembly 102☆15Updated 4 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆14Updated 11 months ago
- TD2☆15Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year