DessimozLab / edgehogLinks
Infering ancestral synteny with hierarchical orthologous groups
☆36Updated 2 months ago
Alternatives and similar repositories for edgehog
Users that are interested in edgehog are comparing it to the libraries listed below
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- TD2☆29Updated last month
- Consensus genome annotation using OMA☆31Updated 6 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆30Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- A Hi-C scaffolding method☆22Updated 4 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Better Alignments with Translated HMMER☆24Updated this week
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated 2 weeks ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- SINE annotation tool for plant genomes☆18Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆16Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- FastK based version of Merqury☆30Updated 3 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆49Updated 3 weeks ago
- ☆29Updated 3 years ago