DessimozLab / edgehogLinks
Infering ancestral synteny with hierarchical orthologous groups
☆38Updated 3 months ago
Alternatives and similar repositories for edgehog
Users that are interested in edgehog are comparing it to the libraries listed below
Sorting:
- TD2☆31Updated 3 weeks ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 9 months ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Improved long-read assembly by preserving contained reads☆30Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated this week
- Better Alignments with Translated HMMER☆24Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- Yet another Hi-C scaffolding tool☆22Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated last month
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Updated last week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated 3 weeks ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- ☆16Updated last year
- ☆17Updated 2 weeks ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago