Alternatives and similar repositories for quartetsampling:

Users that are interested in quartetsampling are comparing it to the libraries listed below

• esayyari / DiscoVista
  ☆38Updated last year
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 4 years ago
• FePhyFoFum / SortaDate
  ☆16Updated 4 years ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated last year
• rufimov / ParalogWizard
  ☆13Updated 8 months ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 2 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 months ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆10Updated 10 years ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆19Updated 3 years ago
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆11Updated 7 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• sjoleary / SNPFILT
  ☆17Updated 6 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆32Updated 10 months ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 4 years ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆19Updated 9 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆27Updated 10 months ago
• blackrim / phyutility
  ☆21Updated 10 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 2 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆44Updated 2 months ago
• gwct / grampa
  Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
  ☆13Updated last year
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆47Updated 5 months ago
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated last month