Alternatives and similar repositories for quartetsampling

Users that are interested in quartetsampling are comparing it to the libraries listed below

• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆11Updated 11 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆52Updated 3 months ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆35Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆17Updated last year
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆14Updated 2 years ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆49Updated 11 months ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆16Updated 3 months ago
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated 2 months ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• marekborowiec / spruceup
  spruceup
  ☆25Updated last month
• biocore / horizomer
  Workflow for detecting genome-wide horizontal gene transfers
  ☆10Updated 7 years ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• BenoitMorel / Asteroid
  ☆15Updated last year
• blackrim / phyutility
  ☆22Updated 11 years ago