miriammiyagi / QuIBL
Quantifying Introgression via Branch Lengths
☆49Updated 2 years ago
Alternatives and similar repositories for QuIBL:
Users that are interested in QuIBL are comparing it to the libraries listed below
- ☆39Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated last year
- Hybridization detection using phylogenetic invariants☆46Updated 4 months ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆16Updated last month
- Infer demographic history with the Moran model☆47Updated 2 weeks ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆57Updated 4 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆26Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆33Updated last year
- DFOIL: Introgression Testing for Five Taxa☆30Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Tutorials on evolutionary genomics☆42Updated 3 years ago
- MSMC2 Scripts☆24Updated last year
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 5 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Software for ancestry estimation in unrelated individuals☆18Updated last week
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Sex assignment through coverage☆17Updated last year
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆41Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts