miriammiyagi / QuIBLView external linksLinks
Quantifying Introgression via Branch Lengths
☆56Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for QuIBL
Users that are interested in QuIBL are comparing it to the libraries listed below
Sorting:
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- ☆44Sep 5, 2023Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Topology weighting by iterative sampling of sub-trees☆84Jan 5, 2025Updated last year
- ☆16Jan 6, 2022Updated 4 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Dec 19, 2024Updated last year
- ☆22Oct 31, 2025Updated 3 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- SMC++ infers population history from whole-genome sequence data.☆172Jan 20, 2024Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- MitoDNA extending assembler from NGS data☆22Aug 21, 2025Updated 5 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 6 months ago
- Tutorials on phylogenetic and phylogenomic inference☆393Sep 13, 2023Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆50May 4, 2025Updated 9 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 2 months ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 4 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated 11 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Some useful gadgets☆11Mar 14, 2022Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- ☆16Feb 20, 2024Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆42Mar 7, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year