☆22Oct 31, 2025Updated 7 months ago
Alternatives and similar repositories for PhyloNet
Users that are interested in PhyloNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46Sep 5, 2023Updated 2 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Fast, accurate species tree estimation.☆13Aug 29, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Quartet-based species tree and tree of blob estimation☆16Feb 10, 2026Updated 4 months ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆88Jan 5, 2025Updated last year
- Implementation of the TreeShrink problem☆56May 28, 2026Updated last week
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- ☆27Apr 14, 2021Updated 5 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Updated this week
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆248Updated this week
- ☆10Jun 13, 2020Updated 5 years ago
- Display utilities for phylogenetic trees and networks☆22Mar 30, 2026Updated 2 months ago
- ☆12Jun 7, 2024Updated 2 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆21May 10, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Nov 15, 2017Updated 8 years ago
- ☆17Apr 24, 2026Updated last month
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- ☆13Apr 30, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 3 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆166Nov 4, 2025Updated 7 months ago
- General tools for genomic analyses.☆391Mar 25, 2026Updated 2 months ago
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 9 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago