Helper scripts for processing and visualization of phylogenetics datasets
☆31Feb 19, 2024Updated 2 years ago
Alternatives and similar repositories for phyloscripts
Users that are interested in phyloscripts are comparing it to the libraries listed below
Sorting:
- ☆14Mar 18, 2025Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 8 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated 3 weeks ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 7 months ago
- ☆18Dec 5, 2020Updated 5 years ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- ☆26Apr 14, 2021Updated 4 years ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆39Mar 3, 2026Updated 2 weeks ago
- spruceup☆25Aug 15, 2025Updated 7 months ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 10 months ago
- ☆20Oct 16, 2024Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 3 months ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆171Mar 10, 2026Updated last week
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 10 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Interactive assembly and analysis of RAD-seq data sets☆80Mar 3, 2026Updated 2 weeks ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆14Mar 9, 2026Updated last week
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated last week
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 2 months ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 5 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- ☆13Dec 4, 2025Updated 3 months ago