Alternatives and similar repositories for phyloscripts

Users that are interested in phyloscripts are comparing it to the libraries listed below

• esayyari / DiscoVista
  ☆41Updated 2 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated 11 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆37Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 2 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆19Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated 3 weeks ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated 2 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆62Updated 10 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆56Updated 3 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆48Updated 10 months ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆14Updated 2 years ago
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆52Updated 2 months ago
• BenoitMorel / ParGenes
  A massively parallel tool for model selection and tree inference on thousands of genes
  ☆50Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 8 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆35Updated 4 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 8 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆15Updated 11 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆37Updated last year
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆17Updated 9 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year