mossmatters / phyloscriptsLinks
Helper scripts for processing and visualization of phylogenetics datasets
☆30Updated last year
Alternatives and similar repositories for phyloscripts
Users that are interested in phyloscripts are comparing it to the libraries listed below
Sorting:
- ☆42Updated 2 years ago
- ☆18Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- Phylogenetic penalized likelihood☆54Updated 5 months ago
- ☆19Updated 7 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Updated 2 years ago
- GONE: Scripts, programs and an example data set☆47Updated 4 months ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- ☆13Updated 8 months ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 11 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆64Updated last week
- Hybridization detection using phylogenetic invariants☆52Updated last year
- UCE Bioinformatics Pipeline☆17Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated last month
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- spruceup☆25Updated 3 months ago
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago