MikkelSchubert / paleomixLinks
Pipelines and tools for the processing of ancient and modern HTS data.
☆47Updated last month
Alternatives and similar repositories for paleomix
Users that are interested in paleomix are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆64Updated last month
- ☆44Updated 8 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 8 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆73Updated 4 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Estimate recombination rates from population genetic data☆68Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆51Updated last month
- Tools and Utilities for msmc and msmc2☆48Updated last month
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year