MikkelSchubert / paleomixLinks
Pipelines and tools for the processing of ancient and modern HTS data.
☆47Updated last month
Alternatives and similar repositories for paleomix
Users that are interested in paleomix are comparing it to the libraries listed below
Sorting:
- Estimate recombination rates from population genetic data☆67Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆61Updated 6 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ☆44Updated 8 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Tutorial about R package PopGenome☆42Updated 6 years ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Synteny Imager☆63Updated 10 months ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Same species annotation lift over pipeline.☆98Updated last year
- ☆26Updated 4 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated last year
- A list of software for pangenomics☆119Updated this week
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Transcripts annotation and GO enrichment Fisher tests☆26Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆80Updated last week
- Genome Scripts used in fungal comparative genomics☆67Updated 4 years ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 2 months ago