Pipelines and tools for the processing of ancient and modern HTS data.
☆51Jul 15, 2026Updated this week
Alternatives and similar repositories for paleomix
Users that are interested in paleomix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- mapping pipeline for ancient DNA☆35Feb 20, 2026Updated 5 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆51Jul 14, 2025Updated last year
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Ancient microbiome snakemake workflow☆30Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A post-mapping authentication toolkit for ancient metagenomics☆22Mar 30, 2026Updated 3 months ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- Module for analysing admixture graphs☆29Apr 30, 2018Updated 8 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Nov 4, 2025Updated 8 months ago
- ☆48Sep 5, 2023Updated 2 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆210Updated this week
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Program for analysing NGS data.☆262Mar 6, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- ☆53May 12, 2026Updated 2 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- an R package for admixture analyses☆19May 15, 2015Updated 11 years ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 3 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 6 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- ☆15Mar 13, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MITObim - mitochondrial baiting and iterative mapping☆116Dec 29, 2020Updated 5 years ago
- Damage parameter estimation for ancient DNA☆19Apr 8, 2025Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆24Apr 24, 2026Updated 2 months ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Jan 15, 2021Updated 5 years ago
- ☆18Dec 3, 2024Updated last year
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Automatically exported from code.google.com/p/macs☆17Oct 17, 2019Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 6 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 3 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago