Pipelines and tools for the processing of ancient and modern HTS data.
☆51Oct 19, 2026Updated last week
Alternatives and similar repositories for paleomix
Users that are interested in paleomix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆52Jul 14, 2025Updated last year
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- mapping pipeline for ancient DNA☆34Oct 22, 2026Updated last week
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- Damage parameter estimation for ancient DNA☆19Aug 26, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- A post-mapping authentication toolkit for ancient metagenomics☆24Mar 30, 2026Updated 6 months ago
- Program for analysing NGS data.☆269Oct 22, 2026Updated last week
- Maximum a posteriori estimate of contamination for ancient samples☆26Sep 28, 2026Updated last month
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- ☆52May 12, 2026Updated 5 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- A pipeline for the analysis of sedimentary ancient mtDNA.☆18Aug 26, 2026Updated 2 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- an R package for admixture analyses☆19May 15, 2015Updated 11 years ago
- ☆18Dec 3, 2024Updated last year
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆26Apr 24, 2026Updated 6 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- ☆49Sep 5, 2023Updated 3 years ago
- ☆19Jun 26, 2025Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 9 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- AdapterRemoval v3 - rapid adapter trimming, read merging, trimming, filtering, and QC☆119Oct 21, 2026Updated last week
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- R Package - Spatiotemporal Ancestry Interpolation and Search☆10Jun 28, 2025Updated last year
- ☆13Apr 30, 2019Updated 7 years ago
- ☆16Jul 9, 2026Updated 3 months ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 9 months ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago