Alternatives and similar repositories for scripts

Users that are interested in scripts are comparing it to the libraries listed below

• zjnolen / PopGLen
  Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…
  ☆17Updated 4 months ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆63Updated 11 months ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆17Updated 5 years ago
• joanam / scripts
  Scripts to handle NGS data and other biological data
  ☆22Updated last year
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• rojaff / LanGen_pipeline
  Suit of R-scripts to perform landscape genomic analyses
  ☆13Updated 5 years ago
• therkildsen-lab / lcwgs-simulation
  ☆17Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• therkildsen-lab / data-processing
  Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis
  ☆12Updated 3 years ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• harrisonlab / popgen
  Population genetics analyses
  ☆23Updated 5 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆20Updated 4 months ago
• pdimens / harpy
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆18Updated this week
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆23Updated 7 months ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 4 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆21Updated 3 years ago
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last month
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆26Updated 6 years ago