tkchafin / scriptsLinks
Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
☆18Updated 2 years ago
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- Scripts for population genetics analysis☆20Updated 2 years ago
- UCE Bioinformatics Pipeline☆16Updated 7 months ago
- Population assignment analysis using R☆17Updated 2 months ago
- A package for population structure inference from RAD-seq data☆31Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- ☆40Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Population Genomics in R workshop☆12Updated last year
- ☆18Updated 7 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- Repository for speciation genomics website☆25Updated 11 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- ☆13Updated 8 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Suit of R-scripts to perform landscape genomic analyses☆14Updated 5 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆14Updated 3 weeks ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆26Updated 2 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 months ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 8 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆16Updated 4 months ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- ☆30Updated 3 weeks ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆11Updated 3 years ago
- Simple and flexible manipulation of genomic data.☆16Updated 2 months ago
- Infer demographic history with the Moran model☆47Updated last week