tkchafin / scriptsLinks
Random scripts, mostly for dealing with RADseq data and DNA sequence alignments
☆18Updated 2 years ago
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆60Updated 9 months ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆15Updated 2 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆17Updated last week
- Methods for examining PCA locally along the genome.☆83Updated 11 months ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆11Updated 3 years ago
- ☆41Updated last year
- Infer demographic history with the Moran model☆47Updated last month
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- UCE Bioinformatics Pipeline☆16Updated 8 months ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- Population assignment analysis using R☆17Updated last month
- ☆17Updated 3 years ago
- Working on cotton resequencing☆11Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- Suit of R-scripts to perform landscape genomic analyses☆14Updated 5 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Population Genomics in R workshop☆12Updated last year
- Collection of Python scripts for parsing/analyses of RAD-seq data☆23Updated 5 months ago
- GONE: Scripts, programs and an example data set☆48Updated 3 weeks ago
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Scripts to handle NGS data and other biological data☆21Updated last year
- Killifish genomics scripts☆12Updated 4 years ago
- A package for population structure inference from RAD-seq data☆33Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago