Alternatives and similar repositories for phylomad

Users that are interested in phylomad are comparing it to the libraries listed below

• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• jsigao / prioritree
  ☆9Updated 2 years ago
• emvolz-phylodynamics / treestructure
  ☆17Updated last week
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated 2 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 8 months ago
• phytest-devs / phytest
  Quality control for phylogenetic analyses
  ☆13Updated 3 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• TBooker / PicMin
  ☆11Updated 2 years ago
• dhelekal / CaveDive
  ☆17Updated last year
• AliTVTeam / AliTV-perl-interface
  ☆10Updated 3 years ago
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 9 months ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• arzwa / Whale.jl
  Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
  ☆16Updated last month
• colindaven / guppy_on_slurm
  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
  ☆16Updated 11 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated 2 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆18Updated last year
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 2 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated last year
• clockor2 / clockor2
  Inferring global and local strict molecular clocks using root-to-tip regression
  ☆13Updated last month
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated 8 months ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆14Updated last year
• alexherbig / MultiVCFAnalyzer
  ☆11Updated 5 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago