☆20Jun 15, 2024Updated 2 years ago
Alternatives and similar repositories for phylomad
Users that are interested in phylomad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 5 months ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- Taxonomy-aware DNA sequence processing toolkit☆34Sep 25, 2026Updated 2 weeks ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆14Sep 26, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Dec 20, 2022Updated 3 years ago
- Phylogenetic model exploration with deep learning☆12Jun 15, 2026Updated 3 months ago
- Phylogenetic tree library for JavaScript/Node.js☆39Nov 16, 2022Updated 3 years ago
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- ☆12May 12, 2019Updated 7 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- ☆13Aug 4, 2026Updated 2 months ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- ☆29Jul 18, 2026Updated 2 months ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆237Updated this week
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 6 months ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Quality control for phylogenetic analyses☆13Oct 5, 2026Updated last week
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- Benchmark empirical datasets for phylogenetic method development☆20Dec 5, 2023Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- ☆13May 27, 2025Updated last year
- ☆25Nov 29, 2022Updated 3 years ago
- ☆49Sep 5, 2023Updated 3 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R We There Yet?☆33Mar 27, 2025Updated last year
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 3 months ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆23Aug 23, 2023Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.☆22Feb 23, 2026Updated 7 months ago
- Sydney Phylogenetics Workshop☆76Jun 22, 2026Updated 3 months ago
- ☆11Feb 11, 2021Updated 5 years ago