Alternatives and similar repositories for chicken-T2T

Users that are interested in chicken-T2T are comparing it to the libraries listed below

• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆27Updated 2 years ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆24Updated last year
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated last month
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆40Updated 4 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 6 months ago
• simon19891216 / CentIER
  ☆35Updated 2 weeks ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆33Updated 10 months ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆9Updated 5 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆23Updated last year
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆22Updated 3 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 2 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated 10 months ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated last month
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 5 months ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• ChuanzhengWei / sorghum_T2T
  The codes to assemble two sorghum cultivars
  ☆10Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• therkildsen-lab / lcwgs-simulation
  ☆17Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆47Updated last month
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago