lurebgi / chicken-T2TLinks
Scripts that used in our chicken T2T manuscript.
☆21Updated 2 years ago
Alternatives and similar repositories for chicken-T2T
Users that are interested in chicken-T2T are comparing it to the libraries listed below
Sorting:
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆26Updated last year
- ☆25Updated 3 years ago
- ☆27Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Genome haplotype assembly and assessment method☆12Updated last year
- ☆24Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- issues for semina "Data Visulization"☆13Updated 3 months ago
- ☆15Updated 3 years ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 3 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- ☆17Updated 3 years ago
- ☆30Updated 8 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- ☆37Updated last month
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- ☆21Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 3 months ago