Alternatives and similar repositories for genesortR

Users that are interested in genesortR are comparing it to the libraries listed below

• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated last week
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 8 months ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 4 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆46Updated last month
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 5 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• sabifo4 / Tutorial_MCMCtree
  MCMCtree tutorials
  ☆25Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆36Updated 5 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• Dee-chen / Tree2gd
  ☆41Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆40Updated 4 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 7 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆41Updated 10 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 2 months ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆41Updated 5 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated 2 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated 3 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 10 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆39Updated last year
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆22Updated last month