mongiardino / genesortR
Sorting and subsampling phylogenomic datasets
☆22Updated last year
Alternatives and similar repositories for genesortR:
Users that are interested in genesortR are comparing it to the libraries listed below
- Computational Analysis of Gene Expression Evolution☆36Updated 3 weeks ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆22Updated 4 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated last week
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆29Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 8 months ago
- ☆39Updated 2 years ago
- ☆32Updated 4 years ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Dinoflagellate Annotation Workflow☆13Updated 2 years ago
- ☆38Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- ☆21Updated 5 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆19Updated 4 years ago
- ☆31Updated 3 months ago
- ☆27Updated last year
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- Scripts to convert between file formats for various analyses☆15Updated last week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 4 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago