lutteropp / QuartetScores
Code for computing various support scores for internodes
☆19Updated 5 years ago
Alternatives and similar repositories for QuartetScores:
Users that are interested in QuartetScores are comparing it to the libraries listed below
- Quartet Sampling method for phylogenetic branch support evaluation☆17Updated last year
- ☆18Updated 4 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- ☆39Updated last year
- ☆22Updated 11 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 9 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated 2 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆12Updated 10 months ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆20Updated last year
- spruceup☆24Updated 7 months ago
- DFOIL: Introgression Testing for Five Taxa☆30Updated 3 years ago
- ☆18Updated last year
- ☆12Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Testing WGD placement along a species tree using gene trees.☆9Updated 6 years ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆28Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- identify potential non-animal transcripts in animal transcriptomes☆11Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated last month
- Population assignment analysis using R☆17Updated 2 weeks ago