lutteropp / QuartetScoresLinks
Code for computing various support scores for internodes
☆19Updated 5 years ago
Alternatives and similar repositories for QuartetScores
Users that are interested in QuartetScores are comparing it to the libraries listed below
Sorting:
- Quartet Sampling method for phylogenetic branch support evaluation☆18Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- ☆39Updated last year
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆18Updated 4 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- ☆14Updated last year
- Testing WGD placement along a species tree using gene trees.☆9Updated 6 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆15Updated last month
- ☆22Updated 11 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆16Updated 11 months ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- ☆20Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- identify potential non-animal transcripts in animal transcriptomes☆11Updated 4 years ago
- DFOIL: Introgression Testing for Five Taxa☆32Updated 4 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆13Updated last year
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆15Updated 7 months ago
- ☆18Updated 8 months ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- spruceup☆24Updated 9 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Updated 7 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Updated last year