Code for computing various support scores for internodes
☆19Apr 7, 2020Updated 5 years ago
Alternatives and similar repositories for QuartetScores
Users that are interested in QuartetScores are comparing it to the libraries listed below
Sorting:
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated last week
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- ☆44Sep 5, 2023Updated 2 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Jan 17, 2025Updated last year
- ☆26Apr 14, 2021Updated 4 years ago
- ☆16Feb 20, 2024Updated 2 years ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 6 months ago
- ☆13Mar 18, 2025Updated 11 months ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- ☆22Oct 31, 2025Updated 4 months ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- spruceup☆25Aug 15, 2025Updated 6 months ago
- Data and scripts used in the oneKP capstone analyses☆13Apr 5, 2022Updated 3 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 8 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆16Feb 16, 2026Updated 2 weeks ago
- Topology weighting from unphased genotypes of any ploidy☆22Dec 16, 2025Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- SimPhy: A comprehensive simulator of gene family evolution☆34Jun 30, 2023Updated 2 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Biogeographic regionalization and spatial conservation☆19Jul 14, 2025Updated 7 months ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- ☆22Mar 25, 2014Updated 11 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 9 months ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- Accurate Species TRee ALgorithm☆273Apr 1, 2024Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆32Oct 16, 2025Updated 4 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Jun 16, 2021Updated 4 years ago