lutteropp / QuartetScoresLinks
Code for computing various support scores for internodes
☆19Updated 5 years ago
Alternatives and similar repositories for QuartetScores
Users that are interested in QuartetScores are comparing it to the libraries listed below
Sorting:
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- ☆18Updated 4 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆42Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- ☆22Updated 11 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- spruceup☆25Updated 3 months ago
- ☆15Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- Phylogenetic penalized likelihood☆54Updated 4 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- identify potential non-animal transcripts in animal transcriptomes☆11Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆31Updated this week
- Topology weighting from unphased genotypes of any ploidy☆17Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆22Updated last year
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago