Alternatives and similar repositories for dfoil:

Users that are interested in dfoil are comparing it to the libraries listed below

• esayyari / DiscoVista
  ☆39Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆50Updated 2 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 6 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated last month
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 3 weeks ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 3 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 4 months ago
• YuboZhangPKU / ERICA
  ☆18Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 5 years ago
• therkildsen-lab / lcwgs-simulation
  ☆16Updated 2 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 3 years ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• hsigeman / findZX
  ☆19Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated 3 weeks ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆45Updated last year
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year