jbpease / dfoilLinks
DFOIL: Introgression Testing for Five Taxa
☆33Updated 4 years ago
Alternatives and similar repositories for dfoil
Users that are interested in dfoil are comparing it to the libraries listed below
Sorting:
- ☆42Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆38Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- Hybridization detection using phylogenetic invariants☆50Updated last year
- Infer demographic history with the Moran model☆48Updated 4 months ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆28Updated 2 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- GONE: Scripts, programs and an example data set☆47Updated 3 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- ☆18Updated 2 years ago
- ☆18Updated 4 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Topology weighting from unphased genotypes of any ploidy☆15Updated 3 months ago
- ☆24Updated 8 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆31Updated 2 weeks ago
- MSMC2 Scripts☆27Updated last month
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- ☆12Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year