Alternatives and similar repositories for TICR

Users that are interested in TICR are comparing it to the libraries listed below

• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆19Updated 2 years ago
• gehara / PipeMaster
  An R Package to build and simulate coalescent models
  ☆20Updated last year
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• esayyari / DiscoVista
  ☆39Updated last year
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆48Updated 2 weeks ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆14Updated 6 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆16Updated 3 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆16Updated 6 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 4 years ago
• jjustison / SiPhyNetwork
  A birth-death-hybridization based phylogenetic network simulator.
  ☆11Updated 8 months ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 months ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆18Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 7 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆29Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 8 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 10 months ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated last week
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• rbouckaert / starbeast3
  ☆18Updated 8 months ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated last month
• gvbarroso / iSMC
  The integrated Sequentially Markovian Coalescent
  ☆13Updated last week
• rufimov / ParalogWizard
  ☆13Updated 2 months ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year