Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)
☆20Mar 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for HybPhyloMaker
Users that are interested in HybPhyloMaker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆18Dec 5, 2020Updated 5 years ago
- ☆14Mar 18, 2025Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Apr 20, 2024Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆51May 4, 2025Updated 11 months ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated last year
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆45Sep 5, 2023Updated 2 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆15Dec 15, 2022Updated 3 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- SimPhy: A comprehensive simulator of gene family evolution☆34Jun 30, 2023Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Apr 5, 2018Updated 8 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 8 months ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Recovering genes from targeted sequence capture data☆134Jan 9, 2026Updated 3 months ago
- Phylogenetic ANalyses of DiversificAtion (in Julia)☆12Jul 13, 2024Updated last year
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 3 months ago
- IMa3☆13May 5, 2025Updated 11 months ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Mar 22, 2026Updated 3 weeks ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 6 months ago
- ☆13Dec 3, 2024Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 11 months ago