A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
☆12Apr 25, 2024Updated 2 years ago
Alternatives and similar repositories for MonoPhylo
Users that are interested in MonoPhylo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sorting and subsampling phylogenomic datasets☆36Apr 9, 2025Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- spruceup☆25Aug 15, 2025Updated last year
- Scripts for file processing and analysis in phylogenetics and phylogeography☆14Jan 6, 2021Updated 5 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Two pipelines to perform phylogenomic analysis☆12Oct 7, 2025Updated last year
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Mar 8, 2024Updated 2 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆17May 19, 2017Updated 9 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2026.☆16Aug 4, 2026Updated 3 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 4 months ago
- ☆49Sep 5, 2023Updated 3 years ago
- ☆22Sep 30, 2026Updated last month
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Oct 21, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- A whole-genome reference database of soil bacteria, fungi, and archaea☆14Jun 19, 2026Updated 4 months ago
- Quartet Sampling method for phylogenetic branch support evaluation☆21Feb 26, 2024Updated 2 years ago
- ☆14Aug 26, 2022Updated 4 years ago
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- ☆23Jun 11, 2026Updated 4 months ago
- ☆34Aug 28, 2026Updated 2 months ago
- ONT-first assembly pipeline☆13Jul 15, 2025Updated last year
- ☆16Jul 24, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- Distributed Evolutionary Algorithms in Python - Entirely Reinvented☆16Oct 13, 2026Updated 3 weeks ago
- ☆27Apr 14, 2021Updated 5 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- A spotty theme (light and dark) for Obsidian☆13Feb 28, 2024Updated 2 years ago
- A box of genomics tools☆24Jun 10, 2026Updated 4 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆96Oct 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ORTHOSKIM allows in silico capture of targeted sequences in genomic or transcriptomic libraries.☆10Apr 7, 2025Updated last year
- R package containing datelife's core functionality☆15Sep 6, 2026Updated 2 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 3 years ago
- Pop!_OS theme for Mailspring☆18Sep 21, 2021Updated 5 years ago
- Alfred 3 workflow for tagging files with Alfred☆12Feb 28, 2018Updated 8 years ago
- Fungal Validation and Identification Pipeline☆16Oct 1, 2026Updated last month
- Inference of putative transmission phylogenetic clusters☆15Oct 13, 2020Updated 6 years ago
Are these results useful?