Alternatives and similar repositories for MonoPhylo

Users that are interested in MonoPhylo are comparing it to the libraries listed below

• andrewgull / MGERT
  Mobile Genetic Elements Retrieving Tool
  ☆16Updated 6 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 5 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆88Updated last year
• nylander / catfasta2phyml
  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
  ☆73Updated last year
• FePhyFoFum / SortaDate
  ☆18Updated 5 years ago
• BenoitMorel / GeneRax
  ☆73Updated 6 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆20Updated 4 years ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆52Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated 11 months ago
• Serka-M / mmlong2-lite
  Lightweight bioinformatics pipeline for microbial genome recovery
  ☆18Updated last month
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated 2 years ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆145Updated 3 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated last month
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆55Updated 3 years ago
• rufimov / ParalogWizard
  ☆13Updated 8 months ago
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆130Updated 3 months ago
• mmatschiner / snapp_prep
  Prepare XML input files for divergence-time estimation with SNAPP
  ☆19Updated 3 years ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆40Updated 2 months ago
• TheBrownLab / PhyloFisher
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…
  ☆34Updated 5 months ago
• uym2 / TreeShrink
  Implementation of the TreeShrink problem
  ☆51Updated last year
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute
  ☆64Updated last week
• MicrobialDarkMatter / nanomotif
  Nanomotif - a tool for identifying methylated motifs in metagenomic samples
  ☆34Updated last week
• thanhleviet / ISfinder-sequences
  Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…
  ☆71Updated 5 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆28Updated 2 months ago
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆50Updated last year