dportik / MonoPhyloLinks
A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.
☆10Updated last year
Alternatives and similar repositories for MonoPhylo
Users that are interested in MonoPhylo are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆89Updated last year
- Mobile Genetic Elements Retrieving Tool☆16Updated 7 months ago
- Recovering genes from targeted sequence capture data☆130Updated 6 months ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆74Updated last year
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Updated 2 months ago
- ☆76Updated 6 months ago
- Hybridization detection using phylogenetic invariants☆52Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆34Updated 3 weeks ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- ☆42Updated 2 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆21Updated 4 years ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- ☆33Updated 3 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- ☆18Updated 5 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- RADseq workflow using STACKS☆61Updated last month
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 3 years ago