Accurate Species TRee ALgorithm
☆280Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for ASTRAL
Users that are interested in ASTRAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 2 months ago
- ☆49Sep 5, 2023Updated 2 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆100Jan 28, 2026Updated 7 months ago
- shell tools for processing phylogenetic trees☆120Aug 30, 2022Updated 4 years ago
- Phylogenetic penalized likelihood☆58Jun 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recovering genes from targeted sequence capture data☆136Jan 9, 2026Updated 7 months ago
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆176Aug 23, 2026Updated last week
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆97Jun 5, 2025Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆476Aug 18, 2026Updated 2 weeks ago
- Tutorials on phylogenetic and phylogenomic inference☆403Apr 12, 2026Updated 4 months ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Implementation of the TreeShrink problem☆58May 28, 2026Updated 3 months ago
- Phylogenetic orthology inference for comparative genomics☆869Jul 15, 2025Updated last year
- Automatically exported from code.google.com/p/densitree☆32Jul 27, 2025Updated last year
- ☆351Mar 4, 2025Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Version 5 of the CAFE phylogenetics software☆177Mar 16, 2026Updated 5 months ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆252May 20, 2026Updated 3 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆341Jul 7, 2023Updated 3 years ago
- General tools for genomic analyses.☆394Mar 25, 2026Updated 5 months ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- CoalHMM☆23Nov 4, 2013Updated 12 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆269Updated this week
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 4 months ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 weeks ago
- An R Package to build and simulate coalescent models☆20Aug 21, 2026Updated last week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆115Jul 27, 2026Updated last month
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- ☆20Dec 5, 2020Updated 5 years ago