smirarab / ASTRALLinks
Accurate Species TRee ALgorithm
☆262Updated last year
Alternatives and similar repositories for ASTRAL
Users that are interested in ASTRAL are comparing it to the libraries listed below
Sorting:
- ☆256Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆396Updated 2 months ago
- Bacterial ribosomal RNA predictor☆247Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆238Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆230Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Application and Python module for average nucleotide identity analyses of microbes.☆215Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆189Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆313Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- ☆212Updated 5 months ago
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆249Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆217Updated last week
- Any Way to Show Multi genomic Synteny☆199Updated 2 weeks ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆183Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆214Updated this week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆293Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆195Updated 3 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆259Updated 6 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆216Updated 3 months ago
- Classifier for metagenomic sequences☆261Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago