smirarab / ASTRALLinks
Accurate Species TRee ALgorithm
☆268Updated last year
Alternatives and similar repositories for ASTRAL
Users that are interested in ASTRAL are comparing it to the libraries listed below
Sorting:
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆248Updated 3 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- Synteny and Rearrangement Identifier☆440Updated 8 months ago
- ☆270Updated 6 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 6 months ago
- Bacterial ribosomal RNA predictor☆268Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆259Updated last week
- ☆229Updated 11 months ago
- Build a partitioned pangenome graph from microbial genomes☆289Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- k-mer based assembly evaluation☆334Updated last year
- An updated pipeline for pangenome investigation☆334Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- Any Way to Show Multi genomic Synteny☆215Updated 6 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 4 months ago
- Filtering and trimming of long read sequencing data☆211Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆220Updated last week
- quality filtering tool for long reads☆381Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆400Updated 6 months ago
- Classifier for metagenomic sequences☆269Updated 6 months ago
- Efficient phylogenomic software by maximum likelihood☆203Updated 4 years ago
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago