Alternatives and similar repositories for ASTRAL

Users that are interested in ASTRAL are comparing it to the libraries listed below

• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆252Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆403Updated 4 months ago
• jtlovell / GENESPACE
  ☆216Updated 7 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆313Updated 2 years ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆368Updated 6 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆332Updated last year
• alekseyzimin / masurca
  ☆260Updated 2 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆191Updated last year
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆215Updated 2 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆242Updated 2 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆319Updated 4 months ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆235Updated 2 years ago
• chaoszhang / ASTER
  Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
  ☆196Updated 3 weeks ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆117Updated 4 years ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆201Updated 2 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated last month
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆363Updated 3 weeks ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆127Updated 9 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆323Updated last year
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆178Updated last week
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆310Updated 6 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆358Updated last week
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆176Updated 3 months ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆208Updated 2 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆247Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆209Updated last year
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆219Updated last month
• wdecoster / chopper
  ☆209Updated last month
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆265Updated 2 months ago