smirarab / ASTRALLinks
Accurate Species TRee ALgorithm
☆262Updated last year
Alternatives and similar repositories for ASTRAL
Users that are interested in ASTRAL are comparing it to the libraries listed below
Sorting:
- Synteny and Rearrangement Identifier☆387Updated last month
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆225Updated 2 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆285Updated last month
- Scan contig files against PubMLST typing schemes☆230Updated 2 years ago
- Bacterial ribosomal RNA predictor☆245Updated last year
- Eukaryotic Genome Annotation Pipeline☆351Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆371Updated 9 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆193Updated 2 months ago
- An updated pipeline for pangenome investigation☆303Updated 3 months ago
- quality filtering tool for long reads☆339Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆159Updated 3 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆268Updated this week
- Recovering genes from targeted sequence capture data☆123Updated 5 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆251Updated 6 months ago
- Rapid large-scale prokaryote pan genome analysis☆347Updated 3 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆322Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆306Updated 2 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆208Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆212Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆408Updated last year
- ☆256Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆189Updated 3 weeks ago
- ☆209Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- A tool to circularize genome assemblies☆242Updated last year